Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi789g00009 ATGGATATGTACATTCGCGTTAAGCGTGGCAAGACAACGTATTTCATCCGGTGCAAGCCATCTGATAAAGTTCTTGACATAAAGCAGAAGTTACAAGAACTCATCGATCAACCAGCTAATGATCAACGATTAAGTCTTCCTGATACAGGGGAAATATTAGAGGATTCTAAGACTCTGGCTGATCAAAAGATTGAAACTGATGCTGTTGTTGCATTGACCTTGAGGAAAGATGATAATGAGTTTGAGGAGGTCAACATTGTTCGACCAAATGATTTCTATCAGTCAAATGCAGAGGGTGCCAGTTGGTGA 309 0.4045 MDMYIRVKRGKTTYFIRCKPSDKVLDIKQKLQELIDQPANDQRLSLPDTGEILEDSKTLADQKIETDAVVALTLRKDDNEFEEVNIVRPNDFYQSNAEGASW 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi789g00009 102 Gene3D - 1 92 - -
Vivi789g00009 102 SMART ubq_7 3 75 IPR000626 GO:0005515
Vivi789g00009 102 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Vivi789g00009 102 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Vivi789g00009 102 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Vivi789g00009 102 PANTHER OS03G0364000 PROTEIN 1 97 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi789g00009 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 8.64e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi789g00009 K03873 - gmx:100499885 182.956