Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi787g00013 ATGATTTGCATGAAAATGGAGGAAAGAGAGAATTTTGGTGCTGTGAATGCAGTGGCGGGTAATCAAGTTCCAGTGAGCTTCCATGGAGCTCCAAGGATTGAAAACAACTTGGATTTTTCCATGGTGACAGTGCCGGTGTCGGTGCCGGTGACCGCGGTGAAGAAGAAGAGGGGGAGGCCAAGGAAGTATGGGCCAGATGGGAAGCCTGCTCCTGGGGCTGTGACGGCGCTTTCGCCGATGCCGATTTCTTCGTCGATTCCGCTGACTGGAGAGTTCTCTGCTTGGAAAAGGAGTGGAGGGAGGCCTGTGGAATCTATCAAGAAATCAGCTTTTAAGTTTGATTTTGAAAGTCCACCTGGACAAGGTGTAAGTGTAGGTGCAAGTGCAGGTGCAGGTGCAGGTGAGGGAATTGCTAAGGCAGTAGGTGCCAATTTCATGGCTTATATACTTACAGTGAATTCTGGCGAGGATGTCACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTCCGTCAATCGACTTCTTCAGGGGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACCGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGCGTGTCTTTGGCAGGTCCAGATGGTCGAGTATTAGGTGGCGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCGGTGCAGGTTGTTGTGGGAAGTTTTCTTCCTAACCACCATCTAGAGGATAAAAGCAAGAAGCAGCGGGTGGAGCATAACATATCAACCATTACACATAATCACCCTCCTCCACATATTAATCATCATCATCACCACACGTCTAATGAAGTAAGTTTCGGTGGTGTGAAACCTATTATGACACCTGCTGCATTTCAAGAAGAGAAAATTGTTTCTTTCAACAACAACAACAATGTTCAAGACTCCAGGAACAACTCATCTACTGATGACAAAGATCCTTTACCTGAAAAGGATTCTAATCATAGCCAATCAAATGGTTGA 1071 0.4594 MICMKMEERENFGAVNAVAGNQVPVSFHGAPRIENNLDFSMVTVPVSVPVTAVKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRSGGRPVESIKKSAFKFDFESPPGQGVSVGASAGAGAGEGIAKAVGANFMAYILTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPNHHLEDKSKKQRVEHNISTITHNHPPPHINHHHHHTSNEVSFGGVKPIMTPAAFQEEKIVSFNNNNNVQDSRNNSSTDDKDPLPEKDSNHSQSNG 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi787g00013 356 ProSiteProfiles PPC domain profile profile. 142 284 IPR005175 -
Vivi787g00013 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 259 IPR005175 -
Vivi787g00013 356 Gene3D - 147 281 - -
Vivi787g00013 356 MobiDBLite consensus disorder prediction 55 74 - -
Vivi787g00013 356 CDD DUF296 148 259 IPR005175 -
Vivi787g00013 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 262 - -
Vivi787g00013 356 MobiDBLite consensus disorder prediction 280 304 - -
Vivi787g00013 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 340 IPR039605 GO:0003680
Vivi787g00013 356 MobiDBLite consensus disorder prediction 324 356 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi787g00013 39 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 52.941 5.65e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi787g00013 - - gmx:100776862 424.861