Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi783g00011 ATGGGTAGAACAAAGGTGAAACTCGCTTTCATTGAGAATGATGCTGCAAGGAAATCAACATATAAGAAAAGGAAGAATGGTTTATTGAAGAAAGTTGATGAACTAAGCACTCTTTGTGGAATTGAAGCTTGTGCCATAATTTTTAGTCCGTATGATCCTCAACCTGAGATTTGGCCATCCCCATTAGGAGTCCAAAAGGTTCTCTCCAAATTCATGACAGTGCCTGAATTTGAGAAAAGCAAAAAAATGGTGAATCCCGAGATTTTCTTGAAACAAAGGGTTATGAAGGTTAAAGAGAAACTAAACAAGCAAAGGAGAGAGAATTGGGAGAAGGAGATGACTATGCTCATGTTTCAATGTCTCAATGCAGCGAAAATTGTGGACAACAATATCGCAGAGACTGATTTGAAAAATCTATCTTGGATGATTGACAAGAATTTGAAACATATCTGTAGAAGGTTGGAGGGAGAGGATAGTTGCATTATTAATAGTCAAGATCAGCTTGAAATGGCATTGGCAGCACTACCACCACCAACAACATCCCAGAATGAAACACTTGAAATGAATAATGCTGACACTATCACAATGAATGATCATGGGGAGGAAGCAATATTGTTTGGTAATGATGCTCAAATTCAAAATGAATTTTGGAGTAATCTTTTACCTTAG 669 0.3722 MGRTKVKLAFIENDAARKSTYKKRKNGLLKKVDELSTLCGIEACAIIFSPYDPQPEIWPSPLGVQKVLSKFMTVPEFEKSKKMVNPEIFLKQRVMKVKEKLNKQRRENWEKEMTMLMFQCLNAAKIVDNNIAETDLKNLSWMIDKNLKHICRRLEGEDSCIINSQDQLEMALAALPPPTTSQNETLEMNNADTITMNDHGEEAILFGNDAQIQNEFWSNLLP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi783g00011 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi783g00011 222 PANTHER MADS BOX PROTEIN 3 150 - -
Vivi783g00011 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi783g00011 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi783g00011 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi783g00011 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi783g00011 222 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi783g00011 222 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Vivi783g00011 222 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi783g00011 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi783g00011 222 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi783g00011 1 181 Type I MADS-box Gene Family AT5G48670 51.031 2.08e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi783g00011 SRF-TF 2.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi783g00011 - - vvo:131636391 279.256