Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi783g00007 ATGACTAGAAAGAAGGTGAAACTTGCTTTCATTGAGAACGACAAGGCAAGGAAATTAGCATACAATAAAAGGAAGAAAAGTTTAGTGAAGAAGGTTGATGAAATATCAACACTTTGTGGTATCGATGCTTGTTCGATAATATATGGCCCCTACGATCCACAGCCTGAGATCTGGCCATCACCGTCAGGAGTGGAAAAGGTGCTTTTGAAATTCAAGACAGCACCTGAGTTTGAGCAAAGCAGAAGGATGGTGAATCAAGAGAGTTTTCTAAGACAAAGGATTTCCAAAGGTGAAAAGCAACTTCAAAATCTATGGAGAGATAACAGAGAGAATGAGACAACTATGCTCATGTTTCAATGTCTCAATGCTGGGAAGGTCGTGCAGAAAGATGTGTCGATGGCTGGTTTGAATGATCTTGCTTGGATGATAGATCAGAACTTGAAAAAGATTGGTAGAAGGTTGGAATCAAGTGATAGTGACAATAATATTCATTCAAATCAAAGCGAAATACAACCACTGCCGTTTACGGATTTGACGAATGCTAATGGTGATGAGACAATGTCACTGCCAATTGGTAATGATGATGAAAATCTTGAGAATGAATTTTGGAGTAACCTACAACGTTGA 627 0.3892 MTRKKVKLAFIENDKARKLAYNKRKKSLVKKVDEISTLCGIDACSIIYGPYDPQPEIWPSPSGVEKVLLKFKTAPEFEQSRRMVNQESFLRQRISKGEKQLQNLWRDNRENETTMLMFQCLNAGKVVQKDVSMAGLNDLAWMIDQNLKKIGRRLESSDSDNNIHSNQSEIQPLPFTDLTNANGDETMSLPIGNDDENLENEFWSNLQR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi783g00007 208 PANTHER MADS BOX PROTEIN 3 128 - -
Vivi783g00007 208 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi783g00007 208 MobiDBLite consensus disorder prediction 156 198 - -
Vivi783g00007 208 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi783g00007 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi783g00007 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi783g00007 208 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi783g00007 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Vivi783g00007 208 MobiDBLite consensus disorder prediction 160 187 - -
Vivi783g00007 208 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi783g00007 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi783g00007 208 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi783g00007 1 155 Type I MADS-box Gene Family AT5G48670 54.839 1.16e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi783g00007 SRF-TF 4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi783g00007 - - vvo:131658566 268.47