Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi783g00006 ATGGCTAGAAAAAAGGTGAAACTTGCTTTCATCATGAATGATGCAGCAAGGAAAACCACGTACAAGAAAAGGAAGAATAGTGTATTGAAGAAGGTTGATGAACTGAGTACCCTGTGTGGAATTGAAGCTTGTGCTATAATTTATAGCCCTTACAATTCTCAACCTGAGATCTGGCCTTCATCATGCGGAGTTCAAAATGTTCTTTCAAAATTCAAGACAGTGTCTGAATTTGGGCAACGCCATAAAATGGTGAATCAAGAGACTTTTTTGAAACAAAGGGTTTTAAAGGCCAAAGAGCAACTAAACAAGCAATGGAGAGACAATAAGGAGAAAGAGATGGCCATGCATATGTTTGAATGTCTCAATGCTGGGAAAATTGTGTCTGGCAATATGTCTAAGGTTGATTTGAATAATTTGTCATGGATGATTGACATGAATTTGAAAGACATTGGTAGAAGGTTGGATAACAATACTAATAGTCAAGATGAATTTGAAGCGGCACTACTACCTCCACAAGCATCAGCATCCCATAATGAAGATATTGAAATGAATAATGTTGATATCATGGTGAATAATCATGGAGATGAACCAATTCTGTTTGATAATGATGTTAATCTTGAAAATGAATTTTGGAATGGTATCATTCTTAAAGAGGATGACTGGGATATTATGGAAGTGGTTGAGAATATTAAAGTCATGATTTGTAAGATAGTTGTTATGGCAAGAACAATTGGTTAA 738 0.3537 MARKKVKLAFIMNDAARKTTYKKRKNSVLKKVDELSTLCGIEACAIIYSPYNSQPEIWPSSCGVQNVLSKFKTVSEFGQRHKMVNQETFLKQRVLKAKEQLNKQWRDNKEKEMAMHMFECLNAGKIVSGNMSKVDLNNLSWMIDMNLKDIGRRLDNNTNSQDEFEAALLPPQASASHNEDIEMNNVDIMVNNHGDEPILFDNDVNLENEFWNGIILKEDDWDIMEVVENIKVMICKIVVMARTIG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi783g00006 245 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Vivi783g00006 245 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vivi783g00006 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Vivi783g00006 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi783g00006 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Vivi783g00006 245 PANTHER MADS BOX PROTEIN 3 130 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi783g00006 1 163 Type I MADS-box Gene Family AT5G48670 55.828 1.95e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi783g00006 SRF-TF 1.1e-15 No_clan