Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi783g00005 ATGGCTACAAGAAAAATTGAGCTTGACTACATTAGTGATGGCTCCAAGAGAAATACAACATTGAGAAAAAGGAAGCAAGGTATCATTAAGAAGATGGATGAAATTACCACCCTTTGTGGAATTGATGCATGTGGCATAATCTATGATGAAAATATGTCACATCCAACAATTTGGCCATCAAAAGATACATTTCAAACATTGATGGACAGATTTAGAGCCCTTCCTGAATCCAAACAAAGAAAAGTGACGTTGGATCACGAGGGCTTATTGAAGATGACAATAGCGAAAGATCAAGAGAAATTAATGAAACAAAAGGACATCACCAAGAAGAAGGAAATGAATAATTTACTTGATCATTTTATCCGAACAGGTGAGTTTGATGGAAATGATTTGAGCGAGAGTGATCTCGAAGATCTGTCGTTGCTTGTTGATAGCAACCTTAAAGAACTCGAGTAG 456 0.3662 MATRKIELDYISDGSKRNTTLRKRKQGIIKKMDEITTLCGIDACGIIYDENMSHPTIWPSKDTFQTLMDRFRALPESKQRKVTLDHEGLLKMTIAKDQEKLMKQKDITKKKEMNNLLDHFIRTGEFDGNDLSESDLEDLSLLVDSNLKELE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi783g00005 151 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi783g00005 151 PANTHER MADS BOX PROTEIN 4 140 - -
Vivi783g00005 151 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi783g00005 151 SUPERFAMILY SRF-like 4 91 IPR036879 GO:0003677|GO:0046983
Vivi783g00005 151 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Vivi783g00005 151 CDD MADS_SRF_like 4 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi783g00005 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi783g00005 1 150 Type I MADS-box Gene Family AT3G05860 35.714 1.60e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi783g00005 SRF-TF 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi783g00005 - - vvo:131636390 193.356