Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi783g00003 ATGACTAGAAAAAAGGTGAAACTTGCTTTCATTGTGAATGATGCGGCAAGAAAAACCACATACAAGAAAAGGACGAAGAGTATGATGAAGATGATTGATGAAATAACCATGCTTTGTGGAGTTGAAGCTTGTGTTCTAATTTATGGCTCTTCTTATGATCCTCATCCTGAGATCTGGCCATCACCACACGGAGTCGAAAAGGTTCTCTCGAAATTCAAGACAATGCCTGAATTTTTGCAAAACAAAAAAATATTGAATCAAGAGACTTTCTTGAAACAAAGGGTTTTAAAATTTAAAGAACAACTAAACAAGCAACGGAGAGACAATAGGGTGAAAGAGATGACAATGTACATGTTTGAATGTCTCAACGCTGCGAAAATTGTGTCCAACAATACATTTAAGGCTGATTTGAATAATTTGTCATGTATGATTGACATGAATTTGAAACACATTGATAGAAGGTTGGATAACAATATTAATAGTCAAGTCGGATTCGAAATGCCACAACTGCCTCCCCAGGCATCAGCATCCCAGAATGGTCATGAAGATGAAGAAATTCTGTTTCGGAACGAAGTTAATCTTGAAAATGAATTTTGGTCAAATCTACTGCCTTAA 615 0.361 MTRKKVKLAFIVNDAARKTTYKKRTKSMMKMIDEITMLCGVEACVLIYGSSYDPHPEIWPSPHGVEKVLSKFKTMPEFLQNKKILNQETFLKQRVLKFKEQLNKQRRDNRVKEMTMYMFECLNAAKIVSNNTFKADLNNLSCMIDMNLKHIDRRLDNNINSQVGFEMPQLPPQASASQNGHEDEEILFRNEVNLENEFWSNLLP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi783g00003 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vivi783g00003 204 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vivi783g00003 204 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Vivi783g00003 204 CDD MADS_SRF_like 2 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vivi783g00003 204 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Vivi783g00003 204 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vivi783g00003 204 PANTHER MADS BOX PROTEIN 3 155 - -
Vivi783g00003 204 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi783g00003 1 180 Type I MADS-box Gene Family AT5G48670 48.087 3.61e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi783g00003 SRF-TF 6.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi783g00003 - - vvo:131636388 412.92