Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi781g00003 ATGGAGGAGTTTGTTATGGAGGAAAAACTGATGGGTTTTTCTAACAAAGATGCAACCCATGTTGTGAAGCGAAAACGCACTAAGAGGTTGAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGTATCTAGTTGTTCAAGTGGTGAAAGCAATACTGATCTTGAGGATGATGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAACATGGTGGTGCTGGTGAAGATGAGGAGGGTGATTATGATAACAAAAGGGAAAAGGGTAGTATTGGAAATAAAAAAATTGATGAAGTTGTAACCGCCACAAAAGGTGGTTTGTATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGGGGTCACAGGGCGAGTCACAAAAAGCCTAAACTCATGTCTGAGGTGAAAAAACCACCTCCATCGCCGCTGTCACAATCACAACTACAAACTTCATCGCAGGATTCGCAACCAGTTAAATTAAAATTACTGGTTGCGAAGTGTGATGAGTTTGAAGTAGTAGCTGAGAAGCCTCGTGGGCCAACTATTTCTTTTCATATGGGGAATCAAAGTTCGAGAGGTGTTAATGGAAACAAAGCAAAGATTCATGAGTGTTCCATTTGTGGATCGGAATTCTCATCCGGACAAGCATTGGGTGGACATATGAGGAGACATCGGACATCTTCGGGAAACGCGGCTGCTGTCGCGGTGGTTGACGGAGGAGTTAGGCCGCCACGGAATATTTTACAGTTGGATCTTAACCTTCCGGCGCCGGAGGAAGATATCCGGGAAGCAAAGTTTCAGTTTCCGACACAGAAATCTATGGTTATGTCTGCTGCTCCGGCTTTGGTGGATTGTCATTATTAG 900 0.4289 MEEFVMEEKLMGFSNKDATHVVKRKRTKRLRLLSPCGVVSTVSSCSSGESNTDLEDDEEDMANCLILLAQGGNHKQHGGAGEDEEGDYDNKREKGSIGNKKIDEVVTATKGGLYIYECKTCNRTFPSFQALGGHRASHKKPKLMSEVKKPPPSPLSQSQLQTSSQDSQPVKLKLLVAKCDEFEVVAEKPRGPTISFHMGNQSSRGVNGNKAKIHECSICGSEFSSGQALGGHMRRHRTSSGNAAAVAVVDGGVRPPRNILQLDLNLPAPEEDIREAKFQFPTQKSMVMSAAPALVDCHY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi781g00003 299 MobiDBLite consensus disorder prediction 132 167 - -
Vivi781g00003 299 SUPERFAMILY beta-beta-alpha zinc fingers 115 236 IPR036236 -
Vivi781g00003 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Vivi781g00003 299 MobiDBLite consensus disorder prediction 72 95 - -
Vivi781g00003 299 Gene3D Classic Zinc Finger 114 236 - -
Vivi781g00003 299 PANTHER ZINC FINGER PROTEIN ZAT5 49 284 - -
Vivi781g00003 299 MobiDBLite consensus disorder prediction 77 95 - -
Vivi781g00003 299 Pfam C2H2-type zinc finger 116 141 - -
Vivi781g00003 299 Pfam C2H2-type zinc finger 214 238 - -
Vivi781g00003 299 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Vivi781g00003 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Vivi781g00003 299 SMART c2h2final6 116 138 IPR013087 -
Vivi781g00003 299 SMART c2h2final6 214 236 IPR013087 -
Vivi781g00003 299 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Vivi781g00003 299 MobiDBLite consensus disorder prediction 151 167 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi781g00003 17 299 C2H2 Transcription Factor Family AT2G28200 38.006 2.79e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi781g00003 zf-C2H2_6 2.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi781g00003 - - aprc:113858527 279.641