LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi774g00007	ATGAATATTTTTGAATCATCGTTTACCGAGTTGAACTACGGCACACACCAGCACTCTGATACTTCTTCTTCGTCAGAAACAAGTTCCTCAAACCATAATAATTCAGAAACGTTTTTGGCATCTGAGAGACCAAAGAAGCGAACAGGTAGAAGAGTATTCAAGGAGACAAGACACCCAGTGTACCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACCGTAACAAATGCAACAACTCAAGGATTTGGCTTGGAACATATCCCACGCCAGAAATGGCCGCACGTGCACATGATGTTGCTGCACTCGTTCTTAAGGGGAAATCAGCTTGTCTTAATTTTGCTGATTCCGCATGGCGGTTGAGGTTGCCGGAATCCAATGATGGAGACGAGATAAGGAAAGCTGCAATGGAAGCTGCTGAGTTAGTTTCTGTTGAGGACAACAACCAGTGTCAGGTTGGTGTTGGTGATGGAGTGGTCATAGAACAAGTTCCAACGGAATTCGACGATATGCATGATTTGCTCATGAGTATTGCAAATGAGCCTTTACGTTCTCCTTCTCCTTCCATCACAGATTATGCCACTAACTGGTTTGACATGGAGATGTTTGACACTCAAGTCTCATCATTGTGGAATTTCGAAACACAGTATTAA	672	0.4345	MNIFESSFTELNYGTHQHSDTSSSSETSSSNHNNSETFLASERPKKRTGRRVFKETRHPVYRGVRKRNNNKWVCEMRVPNRNKCNNSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDGDEIRKAAMEAAELVSVEDNNQCQVGVGDGVVIEQVPTEFDDMHDLLMSIANEPLRSPSPSITDYATNWFDMEMFDTQVSSLWNFETQY	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi774g00007	223	Pfam	AP2 domain	59	113	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	CDD	AP2	61	123	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	MobiDBLite	consensus disorder prediction	1	38	-	-
	Vivi774g00007	223	SUPERFAMILY	DNA-binding domain	60	123	IPR016177	GO:0003677
	Vivi774g00007	223	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	16	218	IPR045277	GO:0003700
	Vivi774g00007	223	ProSiteProfiles	AP2/ERF domain profile.	60	121	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	PRINTS	Ethylene responsive element binding protein signature	61	72	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	SMART	rav1_2	60	127	IPR001471	GO:0003700\|GO:0006355
	Vivi774g00007	223	MobiDBLite	consensus disorder prediction	1	51	-	-
	Vivi774g00007	223	Gene3D	AP2/ERF domain	60	122	IPR036955	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi774g00007	33	219	AP2-EREBP Transcription Factor Family	AT1G12610	47.143	1.81e-56	177

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi774g00007		AP2	2.8e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi774g00007	-		-	psat:127120702	353.599