Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi766g00002 ATGAATCAAGAAATTGATGTTTCACCATTTTTTCTATGCCCTATTTCACTTCAACTCATGAACGATCCGGTTACTGTCTCGACAGGAATAACCTACGACAGACAATCCATCGAAAAATGGCTCTTTTCGTCCAAAAACAATACATGTCCTGTCACAAAACAACAACTCTTACATGATCATCAAAATCTCCTTATTCTCACACCAAACCACACTCTTCGTAGACTCATTCAAGCTTGGTGCACCATTAACTCTTCTTATGGCGTTGAAAGAATTCCAACTCCAAAACCACCAACAACAAAAACCCTTATAGAGAAACACCTCAAAGAAGCTTCTGATTCTTTAGATTCACCTCATTTGCTTATTCAATCTCTTAGAAAGCTCAAAGCAACAGCCTCCGAGAGCGAAACGAATCAACGGTGTATGGAGTCGGCAGGTGCTGTAGAGTTCTTAGCATCAATAGTAACAAAAAACAACACATGCTGTTCATCTTCAACAGAATTAACTGAAACTACCATTCTTGAGAATGATGATGATATGGAAGGGTTTGCTTTTGACTTTAATATTAGTGCAGAAGATGAAGCAATAAACATCCTTTATAATCTTCATTTAACAGAACAAGGTTTGAAAACTCTCTTGAACTTCAAAAATGGAGAATTTTTAGAATCATTAATGAGATTATTGCAAAAGGGTAACTACGATTCAAGAACATATGCAGTTTTTCTGTTGAATTCCATGTCAAAGATTGCTGATCCATCAAAACTAGCCAATCTAAAAACCGAGTTTTTCGTCGAACTAGTTCAGCTTCTCAAAGATCAGATATCAAACAAGGCATCAAAAGCGACACTACAAACATTGATTCAGCTCGTTGAATTAGGGAGAAATAGAGTAAGAGCAGTTGAATCAGGTTGTGTTCATGTTTTGATAGAGCTTCTTCTGGATTCCAAAGAAAGGAAGCCGTGTGAGATGATTTTGGTGCTCTTGGAGATGTTATGTCAATCTGCTGATGGAAGAGCTGAACTTTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATCTTGAGGATTTCAACAATGGCTAATGATAGAGCAGTGAAGATTCTTCTATCTGTTGCAAGATTCTCTGCAACACATACAGTTGTTCAAGAAATGCTGGAAATAGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGAGATTCTTAAATTGCATGCAAACTCTTGGAGGAAGTCTCATTGTGTACCTACTAATTTACTTGCTTCTTATCCATCATCAAGTGCTTGA 1323 0.3711 MNQEIDVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSKNNTCPVTKQQLLHDHQNLLILTPNHTLRRLIQAWCTINSSYGVERIPTPKPPTTKTLIEKHLKEASDSLDSPHLLIQSLRKLKATASESETNQRCMESAGAVEFLASIVTKNNTCCSSSTELTETTILENDDDMEGFAFDFNISAEDEAINILYNLHLTEQGLKTLLNFKNGEFLESLMRLLQKGNYDSRTYAVFLLNSMSKIADPSKLANLKTEFFVELVQLLKDQISNKASKATLQTLIQLVELGRNRVRAVESGCVHVLIELLLDSKERKPCEMILVLLEMLCQSADGRAELLSHGCGLAIVSKKILRISTMANDRAVKILLSVARFSATHTVVQEMLEIGVVAKLCLVLQVDSGNKAKEKAREILKLHANSWRKSHCVPTNLLASYPSSSA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi766g00002 440 PANTHER WDSAM1 PROTEIN 3 428 IPR045185 GO:0061630
Vivi766g00002 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 89 IPR013083 -
Vivi766g00002 440 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Vivi766g00002 440 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Vivi766g00002 440 SUPERFAMILY ARM repeat 115 420 IPR016024 -
Vivi766g00002 440 CDD RING-Ubox_PUB 9 59 IPR045210 -
Vivi766g00002 440 Pfam U-box domain 8 83 IPR003613 GO:0004842|GO:0016567
Vivi766g00002 440 Gene3D - 98 420 IPR011989 -
Vivi766g00002 440 SUPERFAMILY RING/U-box 5 88 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi766g00002 1 437 U-box Gene Family AT3G52450 52.106 7.02e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi766g00002 - - tpra:123902305 696.812