Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi75g00047 ATGGACTTCTCCAAGAAGCGCAAAACAGAAGAGAACGGCGACACCAATTCTCCTCCTCTCTCCAACGACGCCGACGTCGTCATAACAACCCTCACCCCAGAAGACATCCACAAGATTCTCCAACCCTTCACTCAGGACCAGCTACTCGACCTTCTTAAGTCCGCCGCCCTTCAACACCCCAACGTTCTCGATGCCGTACGCTCTGTCGCCGACCGTGATACCTCACGCCGGAAGCTTTTCGTCCGCGGCCTCTCAGGCGAGACCACCAGTGAGACGCTCCGTGCTGTGTTCGCTGCATACGGTGACCTAGATGAAGCAATCGTGATATTCGACAAATCGACCAGTAGGTCTAAGGGATACGGCTTCGTTGTTTTCCGACATGTCGACGGTGCAATTCTTGCCCTAAAGGAACCGAGCAAGAAGATTGACGGGAGAATGACGGTGACGCAGCTTGCGGCGGCGGGTGCGGGTTCTACCGGCGGGGATGTATCTGCTCGTAAGGTTTTTGTAGGTAACGTTCCTTTTGAAGTTTCAGCGGAGAGTCTATTGAGTGAGTTTTCGAAGTACGGTGAAATCGAAGAGGGACCATTAGGGTTTGATAAAGCGAGTGGGAAAACTAGAGGCTTTGCTTTCTTTGTGTATAAAACCGAAGAGGGTGCAAGGAACTCATTGGTGGAGTCTGTCAAAACCGTTGATGGTCACCAAGTGATTTGCAAGTTGGCTGTGGATAACAAAAAGCCGAAACCCGGGAACCAAAACCCATCAGGCTTCCCGGTGGATAATTCTAACCCTAATTATCATCATGCTCCTAATGCAGCAATGGTGCCACAGTATGGTGCCCCTCCTAATGCTTATGGACAACCGCCTTATGGTAATCAAGTTCCTTCTGGTGGCGGATATGGGCCGGGAATTGGTGGAGGTGCCCCTCAGTATGGCGGTCCGGTTCCTGGACCCGTGCCTGTTTCCGGTCCAAGAGGTCATCCTCCCTCTGTTGGTGGATACCCTGATGGTTCACAGTATGGTTACCCGTCGCAGCCTATGCCTATGCAGAGACCCCCTAACGGAGGAATGTACCAAGGCGTGCCACCTTATTATTGA 1098 0.5219 MDFSKKRKTEENGDTNSPPLSNDADVVITTLTPEDIHKILQPFTQDQLLDLLKSAALQHPNVLDAVRSVADRDTSRRKLFVRGLSGETTSETLRAVFAAYGDLDEAIVIFDKSTSRSKGYGFVVFRHVDGAILALKEPSKKIDGRMTVTQLAAAGAGSTGGDVSARKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGARNSLVESVKTVDGHQVICKLAVDNKKPKPGNQNPSGFPVDNSNPNYHHAPNAAMVPQYGAPPNAYGQPPYGNQVPSGGGYGPGIGGGAPQYGGPVPGPVPVSGPRGHPPSVGGYPDGSQYGYPSQPMPMQRPPNGGMYQGVPPYY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi75g00047 365 SUPERFAMILY RNA-binding domain, RBD 67 152 IPR035979 GO:0003676
Vivi75g00047 365 SMART rrm1_1 167 239 IPR000504 GO:0003723
Vivi75g00047 365 SMART rrm1_1 78 150 IPR000504 GO:0003723
Vivi75g00047 365 Gene3D - 68 156 IPR012677 -
Vivi75g00047 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Vivi75g00047 365 MobiDBLite consensus disorder prediction 301 365 - -
Vivi75g00047 365 Gene3D - 158 265 IPR012677 -
Vivi75g00047 365 FunFam UBP1-associated protein 2C isoform A 60 161 - -
Vivi75g00047 365 MobiDBLite consensus disorder prediction 1 23 - -
Vivi75g00047 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Vivi75g00047 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 225 IPR000504 GO:0003723
Vivi75g00047 365 SUPERFAMILY RNA-binding domain, RBD 163 265 IPR035979 GO:0003676
Vivi75g00047 365 PANTHER GEO13361P1-RELATED 60 303 - -
Vivi75g00047 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 247 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi75g00047 149 260 C2H2 Transcription Factor Family AT2G19380 33.628 6.14e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi75g00047 K12741 - gmx:100804230 420.239