Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi75g00020 ATGTCCGTTTTCGTTGTTACCGCCATGGATTTCGCCGTCCTCGGTTTTCTGGTTCCCTCTCTCTGGGAGATCGAAGTCGCTTTCGTTGCCTCCGTATTCGTTATTCTAATTTATTGGTTCTTCACTTTCAGAACTGGTGACCGTAACTCCGATCGATCGCTTTTGGAGAATTCTGTTGCCGACGCCGACGATAAGATTGGCCTGATCAGAGGAGATTCTCAAGCCGGTTCGGCATACCTGGTTAAGTTAGAACTATTGGCTGCTAAAAATCTGATTGCTGCAAACTTAAACGGAACATCGGATCCTTATGCCATTATTACGTGTGGAAATGAAAAGCGATTCAGTTCTATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTAATGTCGATGAACTTCCTGTCCAGATCAATGTCACAATTTTTGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAATTGAAGGTCAAACTGGTGCTGTGTGGCATACTCTGGATAGCCCATCAGGGCAGGTTTGCCTTCATATAAAAACACACAAGCTATCTGCAAATCCTTCCAGGATAAATGGTTATAGCGGAGCCAACACTCGAAGAAGGATACCCTTGGAAAAACAGGGGCCAACAGTAGTCCATCAAAAGCCAGGACCTCTTCAAACAATATTTGAACTTCATCCAGATGAGGTTGTTGATCATAGTTACTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTATCAACATGGCACATTTGTTTCCATTCCAATGTGTTCTCGAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGTATGGGTGCTGGTGGACACGGTGTCCCTCCTTTGGGAAGTCCCGATGGCAGAGTCAGATATAAGTTTGCATCATTTTGGAACAGAAATCATGCATTTAGAAATCTACAACGTGCAGCTAAGAACTTTTGTGAAAAGTTGGAAACTGAGAAGAAGGAAAATGCTGAGTCAGAATTGCGTGCGCATAGCAGTTCTGTCAGACAAAGTTCCGTAATGGATAAAGTTCCAGAAGCCAGCATGCCGAAAGTTGAAAAACTTAAAACTTTCATCAAAGAAGAAGCTTTAGTTGGTATATACAATGATGTTTTCCCCTGCACAGCTGAGCAGTTTTTCAATTTATTGTTAAAGGATGATTCAAAGTTTACTAGCAAGTATCGCTCAGTACGAAAGGATACTAATCTTGTGATGGGACAGTGGCACACAGCAGAAAAATATGATGGTCAAGTTCGAGAGATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCTCCTGACATAGGCATGACAGAGTGGCAACATGTTGTTCTATCACCAGATAAGAAACACCTGGTGTTTGAGACTGTGCAACAGGCGCATGATGTTCCATTTGGGTCCTATTTTGAGGTGCACTGTAAATGGAGTTTGGAGACAGCCAATGAAAGTTCATGTGCTCTGGACATAAGAGTGGGTGCACATTTCAAGAAATGGTGTGTGATGCAATCCAAAATAAAGTCAGGGGCAATCAATGAGTACAAAAAAGAAGTCGATGTTATGTTAGATGTTGCCCGTTCATATATAAAGTCGTATACTTCAGATGACGAGAATGATAAGGTATCTTCGTCCCCTGCGATGACTTCCGAAAGTTAA 1764 0.4189 MSVFVVTAMDFAVLGFLVPSLWEIEVAFVASVFVILIYWFFTFRTGDRNSDRSLLENSVADADDKIGLIRGDSQAGSAYLVKLELLAAKNLIAANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFNVDELPVQINVTIFDWDIIWKSAVLGSVTVPVEIEGQTGAVWHTLDSPSGQVCLHIKTHKLSANPSRINGYSGANTRRRIPLEKQGPTVVHQKPGPLQTIFELHPDEVVDHSYSCALERSFLYHGRMYVSTWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAFRNLQRAAKNFCEKLETEKKENAESELRAHSSSVRQSSVMDKVPEASMPKVEKLKTFIKEEALVGIYNDVFPCTAEQFFNLLLKDDSKFTSKYRSVRKDTNLVMGQWHTAEKYDGQVREITFRSLCNSPMCPPDIGMTEWQHVVLSPDKKHLVFETVQQAHDVPFGSYFEVHCKWSLETANESSCALDIRVGAHFKKWCVMQSKIKSGAINEYKKEVDVMLDVARSYIKSYTSDDENDKVSSSPAMTSES 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi75g00020 587 FunFam BAG-associated GRAM protein 1 isoform X2 228 347 - -
Vivi75g00020 587 Coils Coil 338 358 - -
Vivi75g00020 587 Pfam C2 domain 82 175 IPR000008 -
Vivi75g00020 587 Pfam GRAM domain 230 298 IPR004182 -
Vivi75g00020 587 Pfam VAD1 Analog of StAR-related lipid transfer domain 403 548 IPR031968 -
Vivi75g00020 587 CDD C2 81 177 - -
Vivi75g00020 587 ProSiteProfiles VASt domain profile. 399 569 IPR031968 -
Vivi75g00020 587 Gene3D C2 domain 72 194 IPR035892 -
Vivi75g00020 587 SMART C2_3c 80 186 IPR000008 -
Vivi75g00020 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 79 189 IPR035892 -
Vivi75g00020 587 Gene3D - 228 347 IPR011993 -
Vivi75g00020 587 SMART gram2001c 227 293 IPR004182 -
Vivi75g00020 587 ProSiteProfiles C2 domain profile. 60 177 IPR000008 -
Vivi75g00020 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 11 581 IPR044655 -
Vivi75g00020 587 PRINTS C2 domain signature 96 108 IPR000008 -
Vivi75g00020 587 PRINTS C2 domain signature 141 149 IPR000008 -
Vivi75g00020 587 PRINTS C2 domain signature 120 133 IPR000008 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi75g00020 80 165 C2H2 Transcription Factor Family AT4G21160 25.581 1.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi75g00020 - - tpra:123924252 1070.46