Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi758g00003 ATGGGGAGGGGAAGAGTGCAATTGAAGAGGATTGAGAACAAGATCAATAGGCAAGTGACATTTTCAAAGAGAAGATGTGGTTTGCTGAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAACAAAGGAAAACTCTATGAATATTCAAGCGATCCCTGTATGGAAAGAATTCTAGAACGATATGAAAGGTATTCATATGCGGAGAGGCAACGTGTTCCAAATGATCAGCCACAAAATGAAAATTGGATTATAGAACATGCAAAGTTGAAGGCAAGGTTGGAAGTCATACAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCTTAAGTATGAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATTCAGCTCTCAAACAAATTAGATCAAGGAAGAACCAAGTTGTGTATGAATCCATTTCAGAGCTCCAAAAAAAGGATAAAGCCCTTCAAGAAAAAAACAAGCTTCTCACAAAAAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACTAGAGCTACAGAACGATGGTATGGATCTAGCCTCTGCTGCACTTGTACCTCAATCAATGGAGACATTAAATATTGGAGATGATAATGAAGAAAGCCAAAGTCGATCTAACGCCCTTCTTCCACCATGGATGCTTCGTCCTATAAATGACTAG 696 0.3908 MGRGRVQLKRIENKINRQVTFSKRRCGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMERILERYERYSYAERQRVPNDQPQNENWIIEHAKLKARLEVIQKNQRNFMGEELDGLSMKELQNLEHQLDSALKQIRSRKNQVVYESISELQKKDKALQEKNKLLTKKIKEKEKALAQLELQNDGMDLASAALVPQSMETLNIGDDNEESQSRSNALLPPWMLRPIND 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi758g00003 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 Coils Coil 122 145 - -
Vivi758g00003 231 Coils Coil 151 192 - -
Vivi758g00003 231 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vivi758g00003 231 MobiDBLite consensus disorder prediction 206 220 - -
Vivi758g00003 231 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vivi758g00003 231 Coils Coil 88 108 - -
Vivi758g00003 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Vivi758g00003 231 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi758g00003 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vivi758g00003 231 MobiDBLite consensus disorder prediction 206 231 - -
Vivi758g00003 231 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi758g00003 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi758g00003 231 FunFam MADS-box transcription factor MADS-MC 13 86 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi758g00003 1 199 MADS-box Gene Family AT1G26310 62.687 6.79e-85 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi758g00003 K-box 1.3e-28 No_clan