Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi758g00002 ATGGGGAGGGGAAGAGTGCAATTGAAGAGGATTGAGAACAAGATCAATAGGCAAGTGACATTTTCAAAGAGAAGATGTGGTTTGCTGAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCAACAAAGGAAAACTCTATGAATATTCAAGCGATCCCTGTATGGAAAGAATTCTAGAACGATATGAAAGGTATTCATATGCGGAGAGGCAACGTGTTCCAAATGATCAGCCACAAAATGAAAATTGGATTATAGAACATGCAAAGTTGAAGGCAAGGTTGGAAGTCATACAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGCTTAAGTATGAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATTCAGCTCTCAAACAAATTAGATCAAGGAAGAACCAAGTTGTGTATGAATCCATTTCAGAGCTCCAAAAAAAGGTAACTTTAAGTAACTTCATTTTAATATCAAAGTTAAGCTTGAATTGGCTCTTTAACTTGTATATCAGCATTTTTTTTTTGTATTCACTGCAGGATAAAGCCCTTCAAGAAAAAAACAAGCTTCTCACAAAAAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACTAGAGCTACAGAACGATGGTATGGATCTAGCCTCTGCTGCACTTGTACCTCAATCAATGGAGACATTAAATATTGGAGATGATAATGAAGAAAGCCAAAGTCGATCTAACGCCCTTCTTCCACCATGGATGCTTCGTCCTATAAATGACTAG 789 0.3764 MGRGRVQLKRIENKINRQVTFSKRRCGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMERILERYERYSYAERQRVPNDQPQNENWIIEHAKLKARLEVIQKNQRNFMGEELDGLSMKELQNLEHQLDSALKQIRSRKNQVVYESISELQKKVTLSNFILISKLSLNWLFNLYISIFFLYSLQDKALQEKNKLLTKKIKEKEKALAQLELQNDGMDLASAALVPQSMETLNIGDDNEESQSRSNALLPPWMLRPIND 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi758g00002 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 Coils Coil 122 145 - -
Vivi758g00002 262 Coils Coil 189 223 - -
Vivi758g00002 262 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vivi758g00002 262 Coils Coil 88 108 - -
Vivi758g00002 262 Pfam K-box region 84 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi758g00002 262 ProSiteProfiles K-box domain profile. 88 209 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi758g00002 262 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vivi758g00002 262 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vivi758g00002 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Vivi758g00002 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vivi758g00002 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi758g00002 262 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi758g00002 1 230 MADS-box Gene Family AT1G26310 54.310 4.35e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi758g00002 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi758g00002 K09264 - gmx:100816836 324.324