Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi74g00031 ATGGCGTCTGGAGATGTTGAGTACCGGTGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAGCGAAGCTCTCGAGAAAGCTTTCTCATCTTACGGCGACATCGTTGATTCGAAGATCATTAACGATCGTGAGACTGGGAGGTCAAGAGGTTTCGGATTTGTGACATTCGCTGATGAGAAATCAATGAGAGATGCTATTGAAGGGATGAATGGACAGAACATGGACGGGCGTAACATTACTGTTAACGAAGCTCAAAACCGTAACAGTGGTGGTGGTGGTGGAGGAGGTGGATATGGTGGTCGTCGTGAAGGTGGAGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGAGGAGGATATGGTGGTGGAGGTGGTTATGGTGGTGGTAGGGACCGTGGTTATGGTAATGACGGTGGTGATCGCTATTCCCGTGGTGGTGGTGGTGGTGGTGGCAACTGGAGGGAGTAG 465 0.5269 MASGDVEYRCFVGGLAWATDSEALEKAFSSYGDIVDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQNMDGRNITVNEAQNRNSGGGGGGGGYGGRREGGGGGYGGRREGGGGYGGGGGYGGGRDRGYGNDGGDRYSRGGGGGGGNWRE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi74g00031 154 MobiDBLite consensus disorder prediction 73 89 - -
Vivi74g00031 154 SUPERFAMILY RNA-binding domain, RBD 8 144 IPR035979 GO:0003676
Vivi74g00031 154 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vivi74g00031 154 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vivi74g00031 154 MobiDBLite consensus disorder prediction 68 154 - -
Vivi74g00031 154 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vivi74g00031 154 PANTHER GEO13361P1-RELATED 5 149 - -
Vivi74g00031 154 CDD RRM2_NsCP33_like 9 84 - -
Vivi74g00031 154 Gene3D - 2 122 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi74g00031 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 35.443 3.08e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi74g00031 - K13195 ccaj:109800369 160.999