Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi741g00009 ATGGATACAAAAGTGGCGAGGTTCAACGGAACTAAACGCGTCATTGGGACGAAAACCTGCATCTTTTGGCTCAATGGAAGATGCAACAGAGATAATTGTAGGTTTTTGCACGGTGAACCATCGACTCATTCTTGGAATCATAATGAAAGGAAGGGGCGTTTCTCTTCAACACCGTATCATAATCCGAATAAGAGCCTTCCCAAACATAATGCCAGCAGCACCCTTTCAAATAGAAGGGTTGGAGGTGACAAGTTGCCTCCCAAATGTAACAAGAAGACTGTGTTTATTAGAAAGACCACGGATGACAAGTTGCCTCCCAGACATGAAACTGAGGGTTTGTTAAATCGAAAGACTGAGGACGAGAAGTCGCTTCCTAAAGATGCTACTATTGGAGATGACAGAGAAAAGACACAAGTTGTTACTAAGGTTTCTCCAAAGCATGTCTGCAAATATTGGATGAATGGCGATTGTGTTCGCGGTGAACATTGCCGGAATTTACATTCGTGGTTTTATGGTGATGGCTTTGCCACATTAGCAAAGCTTCAAGGACACAAGAAGCTTGTCACTGGAATTGCACTTCCACATGGATCAAACAAACTTTATTCTGGCAGCACGGATGGGACACTTCGGACATGGGACTGTGTTACTGGTCAGTGTACTAATTTGACGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGCGAGGGCCCGTGGATTTTTGTTGGTCTGCATAACATTGTCAAGGCATGGAATACGCAGACTGCTTCTCATTTAACTCTCGATGGACCTAAGGGACGAGTCCTTTCCATGGTTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCTTGGAGAGGCAGCTCTAAATCCGATTCCCCTTTTGAACTGGTTGCATCACTACGCGGACACACTAAATCTGTTGTTTGCCTGGCTGTCGGATGTAACAAGATGTTGTACTCAGGATCCAAGGATCAAAGCATCAAGGTTTGGGACCTAGACACATTTGAGTGTAAAATGACACTCAATGCGCATACAGACGAAGTCACGTCCCTTATTTGTTGGGACAATTTCTTGTTATCCGGTTCATCAGACTGCTCTATCAAGGTCTGGTATAAAACCGTCGAGGATACTTTGGAAGTTGCATATTCACACAATGTAGAAAATGGCGTTGTTGCGTTATCTGGGATGACTGATCCAGAAAACAAGCCTATATTGTTCTGCTCTACCAGTGACAATTCAGTTCGCCTCTATGAACTTCCATCATTTGCCGAGAGGGGTAGATTGTTTGCTAAGCAAGAAGTTGGATTAATCCATACAGCTCCGGGTGGACTCTTCTTCACCGGAGACAGAACTGGTTTGCTGACTGTCTGGAAATGGTTGGAAAAGCCCAAGGTTGCAGCATCCTCTTGA 1425 0.4442 MDTKVARFNGTKRVIGTKTCIFWLNGRCNRDNCRFLHGEPSTHSWNHNERKGRFSSTPYHNPNKSLPKHNASSTLSNRRVGGDKLPPKCNKKTVFIRKTTDDKLPPRHETEGLLNRKTEDEKSLPKDATIGDDREKTQVVTKVSPKHVCKYWMNGDCVRGEHCRNLHSWFYGDGFATLAKLQGHKKLVTGIALPHGSNKLYSGSTDGTLRTWDCVTGQCTNLTNLGAEATSLISEGPWIFVGLHNIVKAWNTQTASHLTLDGPKGRVLSMVVGNDTLLAGAEDGVISAWRGSSKSDSPFELVASLRGHTKSVVCLAVGCNKMLYSGSKDQSIKVWDLDTFECKMTLNAHTDEVTSLICWDNFLLSGSSDCSIKVWYKTVEDTLEVAYSHNVENGVVALSGMTDPENKPILFCSTSDNSVRLYELPSFAERGRLFAKQEVGLIHTAPGGLFFTGDRTGLLTVWKWLEKPKVAASS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi741g00009 474 SUPERFAMILY CCCH zinc finger 146 168 IPR036855 GO:0046872
Vivi741g00009 474 ProSiteProfiles Zinc finger C3H1-type profile. 15 40 IPR000571 GO:0046872
Vivi741g00009 474 Gene3D - 160 299 IPR015943 GO:0005515
Vivi741g00009 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Vivi741g00009 474 Gene3D - 2 55 - -
Vivi741g00009 474 ProSiteProfiles Zinc finger C3H1-type profile. 148 170 IPR000571 GO:0046872
Vivi741g00009 474 MobiDBLite consensus disorder prediction 55 79 - -
Vivi741g00009 474 MobiDBLite consensus disorder prediction 38 54 - -
Vivi741g00009 474 Gene3D - 300 472 IPR015943 GO:0005515
Vivi741g00009 474 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Vivi741g00009 474 PRINTS G protein beta WD-40 repeat signature 323 337 IPR020472 -
Vivi741g00009 474 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Vivi741g00009 474 SMART c3hfinal6 16 39 IPR000571 GO:0046872
Vivi741g00009 474 SMART c3hfinal6 144 169 IPR000571 GO:0046872
Vivi741g00009 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 345 IPR001680 GO:0005515
Vivi741g00009 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 213 - -
Vivi741g00009 474 ProSitePatterns Trp-Asp (WD) repeats signature. 323 337 IPR019775 -
Vivi741g00009 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 339 - -
Vivi741g00009 474 MobiDBLite consensus disorder prediction 94 137 - -
Vivi741g00009 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 375 IPR001680 GO:0005515
Vivi741g00009 474 PANTHER - 31 473 IPR044715 -
Vivi741g00009 474 SMART WD40_4 174 213 IPR001680 GO:0005515
Vivi741g00009 474 SMART WD40_4 298 336 IPR001680 GO:0005515
Vivi741g00009 474 SMART WD40_4 253 290 IPR001680 GO:0005515
Vivi741g00009 474 SMART WD40_4 382 423 IPR001680 GO:0005515
Vivi741g00009 474 SMART WD40_4 339 376 IPR001680 GO:0005515
Vivi741g00009 474 ProSiteProfiles GCM domain profile. 1 77 IPR003902 GO:0003677|GO:0006355
Vivi741g00009 474 MobiDBLite consensus disorder prediction 38 137 - -
Vivi741g00009 474 SUPERFAMILY WD40 repeat-like 176 469 IPR036322 GO:0005515
Vivi741g00009 474 Pfam WD domain, G-beta repeat 300 336 IPR001680 GO:0005515
Vivi741g00009 474 Pfam WD domain, G-beta repeat 178 213 IPR001680 GO:0005515
Vivi741g00009 474 Pfam WD domain, G-beta repeat 341 375 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi741g00009 145 340 Eukaryotic Initiation Factors Gene Family AT2G46290 26.484 8.90e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi741g00009 WD40 3.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi741g00009 - - mtr:25500966 563.148