Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi739g00011 ATGAAGAGAGAAAGAGAGGTTGATAGCATAACCATGGCAAATTGTTTGATGTTGCTTTCTAGAGGAAGTGAACAATTTGAAGCAACTTATTCATCTACCATCACTTCAAATGATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTCTCATCCTTTCAAGCACTTGGTGGCCATAGGGCAAGTCATAAGAAACCAAGGTTGATGGTGGGAGAAAATATTGATGGTCAATTGCTACATACACCCCCTAAACCTAAATCTCATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGTCATATGAGGAGACATAGAGCTTCAAATATGAATAACTCTAATAATACTATGAGTTCTAGTAGTGGTGGTGGTGGTGGGGGTGGGAATAGTAGTTTTGATTCTTCACAAAAAATGAAAGGTAGAAAGAGAGTTTTGCTTTTGGATTTGGATTTGAATTTGACTCCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGACCACTGCAAATTTGATTGATTATTTGCATTGA 549 0.3661 MKREREVDSITMANCLMLLSRGSEQFEATYSSTITSNDRVFECKTCNRQFSSFQALGGHRASHKKPRLMVGENIDGQLLHTPPKPKSHECSICGLEFAIGQALGGHMRRHRASNMNNSNNTMSSSSGGGGGGGNSSFDSSQKMKGRKRVLLLDLDLNLTPFENDLEFLKIGKTTANLIDYLH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi739g00011 182 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vivi739g00011 182 Gene3D Classic Zinc Finger 39 110 - -
Vivi739g00011 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 164 - -
Vivi739g00011 182 Pfam C2H2-type zinc finger 88 112 - -
Vivi739g00011 182 Pfam C2H2-type zinc finger 40 66 - -
Vivi739g00011 182 SUPERFAMILY beta-beta-alpha zinc fingers 39 110 IPR036236 -
Vivi739g00011 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Vivi739g00011 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vivi739g00011 182 MobiDBLite consensus disorder prediction 111 140 - -
Vivi739g00011 182 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vivi739g00011 182 SMART c2h2final6 88 110 IPR013087 -
Vivi739g00011 182 SMART c2h2final6 41 63 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi739g00011 1 179 C2H2 Transcription Factor Family AT2G37430 44.920 1.96e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi739g00011 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi739g00011 - - gmx:100500371 252.677