Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi737g00003 ATGTATATGCTGAATCATTTATATTTTTCTATTTTTTGTTTTGAATTCAATTTGAATAGAATTATTTTCTTAATGATGAAGAACTATGGTGTTACCGACGATACATTAGGGTATCTCAATGCAGTAAAAGTTGCATTTCAAAACAACATGGAAAAATATGATCAATTTTTACAAGTCCTGAGAGATTTCATTGCTAACAGAATTTATATAAGTGATGTCAAAGCAAAATTCAAGACCTTGTTTAAAGGACATAGATATTTAATTTTTAAATTCAACTCTTTCGTGCCGATGAACCATCGAATCGCACTATTTTCACCGGAGGATGCATTAGGTTTTGTCCAGGCAGTGCACCAAGCGACTCAATATAAGGGAGAAAGTAAATTTAATGAATTTTTAAAAGTTTTGAAGGATTACAAGGATCAAACTATTGATATAAGTTCTTTCACTTCAAGAGTAAAGGTGGTTCTCAAAACTCATCCCGATTTAATTTTGGAATTCAACTCTATCATGCCAAAAGAACATCAAATCACACTTTCATCCGAGGAAGAATCTTTTCTCCGGGCACTAAAACTTATGGTTCAATATAAGAGAGAAAGTAATTTTCAGTATTATGGAAAAGTTTTGGAGAATTTCAAGGGTCTAACTATTGATATAAGTTGTCTCACTGCAAGATTGGAGGTGCTTATCAAAAATCATCCCGAATTAATTTTAGAATTCAAAATCTTCATGCCATCCGGAGGGAAAAAATTAAAAGATGATGGTCATCTTGGTCATTTTCTTCCTTGGGATGTGCTTGATATCATTTGCAAAAAACTAGATTTTGACGACCTCTTTTCGTTTTCTGGTGTTTGCAAGAGTTGGAGGACTTTTCATAAATCAAATTTCTTGTCATCCCAAGAACCGTTGCTTGTTCATATTACTGGTAATTGTACTCACTCATATTCCTTTATTAGCATACCCAATCAAAAAGTTTATGATTTGACGATGATGAGTAGCTTCCAGCCCCCTGACTGTGTCTATGTTAGAGTTTCCAGCGGATATTTCATCTTGGCACATAAAAATAATTCATTTCTGCTATTAAATCAATTTACACTAGAAAAAAGGGTAATCAATGCCAACTTTACAGTTGAATCTCAGTTTTCTGATCGGTACGAAGCCTTGCTTGCTTTTGAGAAATGTTCTGAGGAATATGTCTTGGTTGTTTTATGCAAATATTCTAGCCATTTGTATGTCTATCAATCTCGATACCATGGTTGGTTTACTTATTCAACATTAAAACCTAAGGAATTGGTAGTCGACTTTGTGGTTTTGAATAATATAATATATGTCGTCACTGACAAAGCCAACATAGGGGTACTAAACTTGAATTCCAAGAATATTCAATTTCTAAACCTCAAGAATACTCCCTCAAAAATTCCCTCCAAACTTCCCTCAGATTCCTTTAAATTGGTTAATTGTGATGAGCAACTTTTTGTGTTTCATTCAATATCCATCAATTATAAGAGGGAAGTTTACAAGATAGACTTGTCAACTATGAATTATGTTAAGATGAAAACTTTGGGTGACATTGCATTATTTTATGTTTCTGGGAGAAACTGTCGGGCATTGAGCAACCCGAAGAGATTTGGGTACGAGAGCAACCATGTGTATGAAGTTAGTAGTCTATCTCAATGTACTAAGTATGATTGGAATGCTGGTCGTCCATCAAAAATATGGAGTGCTGGTTGTACATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTTCAATCTCTTTGATTGGTGTTTTAGACATGTAAAATACGAAGTAGATTATTCTTTAGTTGAATAA 1833 0.335 MYMLNHLYFSIFCFEFNLNRIIFLMMKNYGVTDDTLGYLNAVKVAFQNNMEKYDQFLQVLRDFIANRIYISDVKAKFKTLFKGHRYLIFKFNSFVPMNHRIALFSPEDALGFVQAVHQATQYKGESKFNEFLKVLKDYKDQTIDISSFTSRVKVVLKTHPDLILEFNSIMPKEHQITLSSEEESFLRALKLMVQYKRESNFQYYGKVLENFKGLTIDISCLTARLEVLIKNHPELILEFKIFMPSGGKKLKDDGHLGHFLPWDVLDIICKKLDFDDLFSFSGVCKSWRTFHKSNFLSSQEPLLVHITGNCTHSYSFISIPNQKVYDLTMMSSFQPPDCVYVRVSSGYFILAHKNNSFLLLNQFTLEKRVINANFTVESQFSDRYEALLAFEKCSEEYVLVVLCKYSSHLYVYQSRYHGWFTYSTLKPKELVVDFVVLNNIIYVVTDKANIGVLNLNSKNIQFLNLKNTPSKIPSKLPSDSFKLVNCDEQLFVFHSISINYKREVYKIDLSTMNYVKMKTLGDIALFYVSGRNCRALSNPKRFGYESNHVYEVSSLSQCTKYDWNAGRPSKIWSAGCTSKIYPYLRSLKDFNLFDWCFRHVKYEVDYSLVE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi737g00003 610 PANTHER SIN3B-RELATED 32 113 IPR039774 GO:0003714
Vivi737g00003 610 SUPERFAMILY PAH2 domain 180 245 IPR036600 GO:0006355
Vivi737g00003 610 SUPERFAMILY PAH2 domain 32 96 IPR036600 GO:0006355
Vivi737g00003 610 Gene3D Paired amphipathic helix 34 96 IPR036600 GO:0006355
Vivi737g00003 610 Gene3D Paired amphipathic helix 108 171 IPR036600 GO:0006355
Vivi737g00003 610 Pfam Paired amphipathic helix repeat 127 167 IPR003822 GO:0006355
Vivi737g00003 610 Pfam Paired amphipathic helix repeat 51 94 IPR003822 GO:0006355
Vivi737g00003 610 SMART fbox_2 260 300 IPR001810 GO:0005515
Vivi737g00003 610 Gene3D - 259 296 - -
Vivi737g00003 610 Coils Coil 608 610 - -
Vivi737g00003 610 SUPERFAMILY F-box domain 259 296 IPR036047 GO:0005515
Vivi737g00003 610 CDD F-box_SF 260 288 - -
Vivi737g00003 610 ProSiteProfiles PAH domain profile. 174 246 IPR003822 GO:0006355
Vivi737g00003 610 SUPERFAMILY PAH2 domain 106 173 IPR036600 GO:0006355
Vivi737g00003 610 FunFam Paired amphipathic helix protein Sin3 34 96 - -
Vivi737g00003 610 ProSiteProfiles PAH domain profile. 27 98 IPR003822 GO:0006355
Vivi737g00003 610 Pfam F-box domain 260 289 IPR001810 GO:0005515
Vivi737g00003 610 ProSiteProfiles PAH domain profile. 100 173 IPR003822 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi737g00003 108 183 WRKY Transcription Factor Family AT4G12020 39.474 1.68e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi737g00003 PAH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi737g00003 - - vvo:131635782 1238.02