Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi737g00002 ATGCCTAATTCTGAAGCAGTGCTGCTGCAGCAGCTATTCAATTATGCAAATCAGACTTCAAAATCAATGAACTATGGTGTTACCGACGATACATTAGGGTATCTCAATGCAGTAAAAGTTGCATTTCAAAACAACATGGAAAAATATGATCAATTTTTACAAGTCCTGAGAGATTTCATTGCTAACAGAATTTATATAAGTGATGTCAAAGCAAAATTCAAGACCTTGTTTAAAGGACATAGATATTTAATTTTTAAATTCAACTCTTTCGTGCCGATGAACCATCGAATCGCACTATTTTCACCGGAGGATGCATTAGGTTTTGTCCAGGCAGTGCACCAAGCGACTCAATATAAGGGAGAAAGTAAATTTAATGAATTTTTAAAAGTTTTGAAGGATTACAAGGATCAAACTATTGATATAAGTTCTTTCACTTCAAGAGTAAAGGTGGTTCTCAAAACTCATCCCGATTTAATTTTGGAATTCAACTCTATCATGCCAAAAGAACATCAAATCACACTTTCATCCGAGGAAGAATCTTTTCTCCGGGCACTAAAACTTATGGTTCAATATAAGAGAGAAAGTAATTTTCAGTATTATGGAAAAGTTTTGGAGAATTTCAAGGGTCTAACTATTGATATAAGTTGTCTCACTGCAAGATTGGAGGTGCTTATCAAAAATCATCCCGAATTAATTTTAGAATTCAAAATCTTCATGCCATCCGGAGGGAAAAAATTAAAAGATGATGGTCATCTTGGTCATTTTCTTCCTTGGGATGTGCTTGATATCATTTGCAAAAAACTAGATTTTGACGACCTCTTTTCGTTTTCTGGTGTTTGCAAGAGTTGGAGGACTTTTCATAAATCAAATTTCTTGTCATCCCAAGAACCGTTGCTTGTTCATATTACTGGTAATTGTACTCACTCATATTCCTTTATTAGCATACCCAATCAAAAAGTTTATGATTTGACGATGATGAGTAGCTTCCAGCCCCCTGACTGTGTCTATGTTAGAGTTTCCAGCGGATATTTCATCTTGGCACATAAAAATAATTCATTTCTGCTATTAAATCAATTTACACTAGAAAAAAGGGTAATCAATGCCAACTTTACAGTTGAATCTCAGTTTTCTGATCGGTACGAAGCCTTGCTTGCTTTTGAGAAATGTTCTGAGGAATATGTCTTGGTTGTTTTATGCAAATATTCTAGCCATTTGTATGTCTATCAATCTCGATACCATGGTTGGTTTACTTATTCAACATTAAAACCTAAGGAATTGGTAGTCGACTTTGTGGTTTTGAATAATATAATATATGTCGTCACTGACAAAGCCAACATAGGGGTACTAAACTTGAATTCCAAGAATATTCAATTTCTAAACCTCAAGAATACTCCCTCAAAAATTCCCTCCAAACTTCCCTCAGATTCCTTTAAATTGGTTAATTGTGATGAGCAACTTTTTGTGTTTCATTCAATATCCATCAATTATAAGAGGGAAGTTTACAAGATAGACTTGTCAACTATGAATTATGTTAAGATGAAAACTTTGGGTGACATTGCATTATTTTATGTTTCTGGGAGAAACTGTCGGGCATTGAGCAACCCGAAGAGATTTGGGTACGAGAGCAACCATGTGTATGAAGTTAGTAGTCTATCTCAATGTACTAAGTATGATTGGAATGCTGGTCGTCCATCAAAAATATGGAGTGCTGGTTGTACATCAAAAATATACCCATATCTTCGTTCTCTTAAAGACTTCAATCTCTTTGATTGGTGTTTTAGACATGTAAAATACGAAGTAGATTATTCTTTAGTTGAATAA 1821 0.3438 MPNSEAVLLQQLFNYANQTSKSMNYGVTDDTLGYLNAVKVAFQNNMEKYDQFLQVLRDFIANRIYISDVKAKFKTLFKGHRYLIFKFNSFVPMNHRIALFSPEDALGFVQAVHQATQYKGESKFNEFLKVLKDYKDQTIDISSFTSRVKVVLKTHPDLILEFNSIMPKEHQITLSSEEESFLRALKLMVQYKRESNFQYYGKVLENFKGLTIDISCLTARLEVLIKNHPELILEFKIFMPSGGKKLKDDGHLGHFLPWDVLDIICKKLDFDDLFSFSGVCKSWRTFHKSNFLSSQEPLLVHITGNCTHSYSFISIPNQKVYDLTMMSSFQPPDCVYVRVSSGYFILAHKNNSFLLLNQFTLEKRVINANFTVESQFSDRYEALLAFEKCSEEYVLVVLCKYSSHLYVYQSRYHGWFTYSTLKPKELVVDFVVLNNIIYVVTDKANIGVLNLNSKNIQFLNLKNTPSKIPSKLPSDSFKLVNCDEQLFVFHSISINYKREVYKIDLSTMNYVKMKTLGDIALFYVSGRNCRALSNPKRFGYESNHVYEVSSLSQCTKYDWNAGRPSKIWSAGCTSKIYPYLRSLKDFNLFDWCFRHVKYEVDYSLVE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi737g00002 606 Pfam Paired amphipathic helix repeat 47 90 IPR003822 GO:0006355
Vivi737g00002 606 Pfam Paired amphipathic helix repeat 123 163 IPR003822 GO:0006355
Vivi737g00002 606 Gene3D - 255 292 - -
Vivi737g00002 606 PANTHER SIN3B-RELATED 28 99 IPR039774 GO:0003714
Vivi737g00002 606 SUPERFAMILY PAH2 domain 102 169 IPR036600 GO:0006355
Vivi737g00002 606 Pfam F-box domain 256 285 IPR001810 GO:0005515
Vivi737g00002 606 ProSiteProfiles PAH domain profile. 23 94 IPR003822 GO:0006355
Vivi737g00002 606 SUPERFAMILY F-box domain 255 292 IPR036047 GO:0005515
Vivi737g00002 606 CDD F-box_SF 256 284 - -
Vivi737g00002 606 ProSiteProfiles PAH domain profile. 96 169 IPR003822 GO:0006355
Vivi737g00002 606 SMART fbox_2 256 296 IPR001810 GO:0005515
Vivi737g00002 606 ProSiteProfiles PAH domain profile. 170 242 IPR003822 GO:0006355
Vivi737g00002 606 Gene3D Paired amphipathic helix 104 167 IPR036600 GO:0006355
Vivi737g00002 606 Gene3D Paired amphipathic helix 30 92 IPR036600 GO:0006355
Vivi737g00002 606 FunFam Paired amphipathic helix protein Sin3 30 92 - -
Vivi737g00002 606 SUPERFAMILY PAH2 domain 28 92 IPR036600 GO:0006355
Vivi737g00002 606 SUPERFAMILY PAH2 domain 176 241 IPR036600 GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi737g00002 104 179 WRKY Transcription Factor Family AT4G12020 39.474 1.29e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi737g00002 PAH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi737g00002 - - vvo:131635782 1181.78