Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi731g00018 ATGGCAGCGGCGCGAGAATTTTCCGCAGCGCTGTTCTCTTGCTCAAAGCACCGCACTTCCCTTTTTCAGCGTCTCTTCCTTCGTACAAAGAGTTCCAAGATTTTTGTCAAAGGTTTAGCATTTTCTACTACAGAAGAGAAATTAGCTGAAGCTTTTTCTCAATACGGAAATGTTCTCAAAGCTGATATAGTATTGAATAAAGCCAAGAATAGATCCAAAGGTTTTGGATATGTGACTTTTTCAGAGGAGGAAGAAGCCCGTAAAGCACAGATTGACATGAATGGAAAGATATTACACGGACGTGTCTTATATGTAGACATGGATTCGCCTGACGAGCAAAAGAAAACTTACAAGCGCGCAACTAAAAATGCAAATGCTAATAATGGTGATCTGCATATGGATTGA 405 0.4025 MAAAREFSAALFSCSKHRTSLFQRLFLRTKSSKIFVKGLAFSTTEEKLAEAFSQYGNVLKADIVLNKAKNRSKGFGYVTFSEEEEARKAQIDMNGKILHGRVLYVDMDSPDEQKKTYKRATKNANANNGDLHMD 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi731g00018 134 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vivi731g00018 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vivi731g00018 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 103 IPR000504 GO:0003723
Vivi731g00018 134 SUPERFAMILY RNA-binding domain, RBD 30 119 IPR035979 GO:0003676
Vivi731g00018 134 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 121 - -
Vivi731g00018 134 Gene3D - 22 132 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi731g00018 26 120 Eukaryotic Initiation Factors Gene Family AT1G22760 35.789 3.46e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi731g00018 - K13195 gmx:100527061 154.451