Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi730g00025 ATGGGTGCTGTCGTCGAGTACTTACCGCCACCGCGCGAGGAGGAGTTGGCCGTACTGTCTCTCAACAAGCTGCCGTTAGGTTTCCGGTTCCGTCCCACCGACGAGGAGCTAGTTGATTACTATCTCAGGCTTAAGATCAACGGAAACGGTGATGAAGTTTGGGTTATCCGGGAGATTGATGTTTGTAAATGGGAGCCTTGGGATTTGCCTGATTTATCTGTAGTGAGGAACAAGGATCTGGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCGAATGGGAATAGGTTGAACAGAGCGACGGAGCATGGGTATTGGAAGGCGACGGGTAAGGATAGGATGATTAAGTCTGGACCGGTATTGATTGGAATGAAGAAGACTCTTGTTTTTTATGCCGGTCGTGCTCCCAAGGGGCAGAGGACCCATTGGGTTATGCATGAGTATAGGCCTACCTTGAAGGAGCTTGATGGTACTAACCCTGGACAGAACCCATATGTCCTATGTCGCTTGTTTAAGAAGCAGGATGAGAGTCTCAATAATTCAAACTGTGGTGAAATCGAGCAGACTGCCTCAACTCCTATGACTACGTCAACTCCAATGATCACCTCAACTCCTGCGACCGCCCATTACTCTCCAGAAGAAATACAGTCTGATCCAAATATGGTTCCTGTAACTTCCTCACCGGCCACAGAGGATGATAAGCACCTACCAGATATCCCTGAAAACTCCGGGGAAGCAATATCTAATGTTATAACCCCATCTGATTGCTATAGCGAAGCATGTAATCCTGCTGATGCACAGTATCAAATTGGAGAAGTACCGGCTGCAGAGGAGGACCCGTTGTGGAACTTTGGCATATTTGATGACCCATTATTGGAGCCATTGGATGATAAATTATTCTCCCCACCCCATGCACATTTTCCACCTGAATTTTACCTTCAAGACAACAATGAATTATTTCAATATGATACAAATAAGACAGATGATTCAGACTTTTTGAACTCGGCTATTAATTGGGACGATCTCTGTGATTCAATCTATCTTGATGATGAGAACAGTGGGCCATGCAGTGTTTCAGATGCGGAAATGGCCAATATGACGCATCTGCAAGCATCACATGCTTATCCCGAGGGGGCTTTTCTGCACAATAGCGATGTAGGATTGTTTCAAAACAATTCCCAGATGACATTTTCAACCGATTTTAGTATGGGCCAAACACCCACTGTGACCAATGATTATCAGCAATCAGGGAATTTGGATGCCGTTGTCCATGGCGACAACACTGGAATCCGAATAAGGAGTCGACAAGGACAAAATGAACAGCCAAACATGAACCCAGTGATGCAAGCACAAGGTAGTGCCCCAAGGAGAATACGATTGGGAGGGTTTGTGAATCATTCCCTTGGTTCCGATGAGACGACACATTCCTTTCGTTCTGAGGAGACGACACATTCCCCTTGTTCTGAAGAGACGACAAAAGGTGAGAGTTGTACATCAGAATATGAGCAATCAAGGAATTTGGATCCTGTTGTCAATGAGGACACTAGTATCAGGATAAGGTCTCGACAAGGAAGAAATGAACAGCCAAACATGATTCCAGTGATGCAAGCACAAGGTAGTGCACCGAGGAGAATACGATTGGGAGGATTTGTGACGCGTTCCCTAGGTTCCGAAGAGACGAGAAAAGATGAGAGTTGTGCACCCGAAAACCATAACTCAGAAACCATCATTGCCAGCGAGTCATCTATTTTGCAGGAGAGGGAAGCATCAGAAAACCTTGCTACTGTTGCGAGTATTTCCGACATTAACTATGTGGATGAACCAGAGAAGACATCTCCGACAGAATCCACCTTGGGGTGGAAAGACTTTTTAATGGGCAAAAGGGCCCATAACACATCAAAGCCATCCTCGAATCGGTCCAAGTGGTTTGCTGTTCTTGCTGTATCTGCAGGTGTACTGATCTCGTCAGTAATGTATATGAATATTTGGGGATATCTTAGATTTGAAACTGCTTAA 2019 0.4552 MGAVVEYLPPPREEELAVLSLNKLPLGFRFRPTDEELVDYYLRLKINGNGDEVWVIREIDVCKWEPWDLPDLSVVRNKDLEWFFFCPQDRKYPNGNRLNRATEHGYWKATGKDRMIKSGPVLIGMKKTLVFYAGRAPKGQRTHWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLNNSNCGEIEQTASTPMTTSTPMITSTPATAHYSPEEIQSDPNMVPVTSSPATEDDKHLPDIPENSGEAISNVITPSDCYSEACNPADAQYQIGEVPAAEEDPLWNFGIFDDPLLEPLDDKLFSPPHAHFPPEFYLQDNNELFQYDTNKTDDSDFLNSAINWDDLCDSIYLDDENSGPCSVSDAEMANMTHLQASHAYPEGAFLHNSDVGLFQNNSQMTFSTDFSMGQTPTVTNDYQQSGNLDAVVHGDNTGIRIRSRQGQNEQPNMNPVMQAQGSAPRRIRLGGFVNHSLGSDETTHSFRSEETTHSPCSEETTKGESCTSEYEQSRNLDPVVNEDTSIRIRSRQGRNEQPNMIPVMQAQGSAPRRIRLGGFVTRSLGSEETRKDESCAPENHNSETIIASESSILQEREASENLATVASISDINYVDEPEKTSPTESTLGWKDFLMGKRAHNTSKPSSNRSKWFAVLAVSAGVLISSVMYMNIWGYLRFETA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi730g00025 672 Gene3D NAC domain 33 179 IPR036093 GO:0003677|GO:0006355
Vivi730g00025 672 MobiDBLite consensus disorder prediction 470 510 - -
Vivi730g00025 672 MobiDBLite consensus disorder prediction 490 510 - -
Vivi730g00025 672 SUPERFAMILY NAC domain 19 174 IPR036093 GO:0003677|GO:0006355
Vivi730g00025 672 FunFam Nac domain-containing protein 86 33 177 - -
Vivi730g00025 672 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 236 - -
Vivi730g00025 672 MobiDBLite consensus disorder prediction 211 228 - -
Vivi730g00025 672 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Vivi730g00025 672 MobiDBLite consensus disorder prediction 474 489 - -
Vivi730g00025 672 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Vivi730g00025 672 MobiDBLite consensus disorder prediction 211 246 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi730g00025 16 461 NAC Transcription Factor Family AT4G35580 42.796 3.04e-95 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi730g00025 NAM 9.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi730g00025 - - vvo:131620706 1334.32