Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi726g00001 ATGGAAACTCACTTCAATCACAGTCTCTTCGAGAGACGCCCCTTCCTCAAATCCAAAGCTCCTGCAGTTAAATGGGTGAAACAATGGGTTCCCCAAGATGTTGTTGCAACTGGTGGGAAGTGCATGCTCTTAAAATGGGTAACAGAGGATGCCGTAAAGGCCTTGAAAGAAAAGGAGAATGAACCTTTAGCGCCTGAGCCAGAACCCGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTACGAAGGCTGCGGGAAGACATTTATTGATGCGGGTGCTTTGAGGAAGCATTCTCACATCCACGGAGAAAGGCAATTTGTTTGCCATTACGAAGGGTGTGGAAAGAAATTTCTGGACAGCTCAAAGTTAAAAAGACATTTCCTTATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCTTGGATTTTAACCTGAGGTCTCACATGAAGACGCATTCACAAGAGAACTATCATATTTGCCCATACCCTGATTGTGGGAAGAGATACGCCCATGAATACAAGCTAAAGAATCACATTACTTCTCATCATGAAAAGGGTACACCAACACCAATGGAGGTGACGAAGTATGCTACTCCACAATCGGAAAAGCAAACAAAAGCACCTAAACCTTCTGGGGCAGCATATGGCTCGGCATCCTCTGATCGCCCATATGCATGTCCTTATGATGGGTGTGAAAAAGCGTACATACATGTTTACAAGCTTAGACTGCATTTCAGGAGGGCGCATCCCGGTCACATTGATGAAAATACCGAAAATGTCAACAATGAAATGGATGAAGCAAGTGATCAAGATGCTTATGGTGGAAAACAGTCTAATGGTAAAAGTCAGAAGCAGAGTAGGCCCAAGCCAAACGTGAAAGCGCCTCCTTCCAAAGTTCCCCAACGAAAAGGGTCGAATCCAACTCCTCCCACTATAAACATGGTTAAAAAACTTTGGCCTGTGAAAGAAGAAACTTACGACGAGGACAGCGAAGAAACCGAGGAGGATCGGGACAATGTTGAAGAAGGTTGGAGATATGCTGGAAACAACGAAGATGATGATGAAGAAACAGAATATGAAGACTGA 1110 0.4459 METHFNHSLFERRPFLKSKAPAVKWVKQWVPQDVVATGGKCMLLKWVTEDAVKALKEKENEPLAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHITSHHEKGTPTPMEVTKYATPQSEKQTKAPKPSGAAYGSASSDRPYACPYDGCEKAYIHVYKLRLHFRRAHPGHIDENTENVNNEMDEASDQDAYGGKQSNGKSQKQSRPKPNVKAPPSKVPQRKGSNPTPPTINMVKKLWPVKEETYDEDSEETEEDRDNVEEGWRYAGNNEDDDEETEYED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi726g00001 369 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Vivi726g00001 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Vivi726g00001 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Vivi726g00001 369 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 354 - -
Vivi726g00001 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Vivi726g00001 369 MobiDBLite consensus disorder prediction 274 369 - -
Vivi726g00001 369 FunFam Putative zinc finger protein 143 103 133 - -
Vivi726g00001 369 Gene3D Classic Zinc Finger 103 133 - -
Vivi726g00001 369 MobiDBLite consensus disorder prediction 201 215 - -
Vivi726g00001 369 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Vivi726g00001 369 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Vivi726g00001 369 FunFam zinc finger transcription factor YY1 77 102 - -
Vivi726g00001 369 FunFam zinc finger transcription factor YY1 163 194 - -
Vivi726g00001 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
Vivi726g00001 369 SMART c2h2final6 232 257 IPR013087 -
Vivi726g00001 369 SMART c2h2final6 136 160 IPR013087 -
Vivi726g00001 369 SMART c2h2final6 166 190 IPR013087 -
Vivi726g00001 369 SMART c2h2final6 77 101 IPR013087 -
Vivi726g00001 369 SMART c2h2final6 106 130 IPR013087 -
Vivi726g00001 369 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Vivi726g00001 369 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Vivi726g00001 369 Gene3D Classic Zinc Finger 202 277 - -
Vivi726g00001 369 FunFam Zinc finger transcription factor YY1 207 273 - -
Vivi726g00001 369 MobiDBLite consensus disorder prediction 280 298 - -
Vivi726g00001 369 Gene3D Classic Zinc Finger 162 191 - -
Vivi726g00001 369 MobiDBLite consensus disorder prediction 187 229 - -
Vivi726g00001 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Vivi726g00001 369 SUPERFAMILY beta-beta-alpha zinc fingers 117 169 IPR036236 -
Vivi726g00001 369 FunFam Zinc finger protein 410 134 161 - -
Vivi726g00001 369 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Vivi726g00001 369 Gene3D Classic Zinc Finger 77 102 - -
Vivi726g00001 369 Gene3D Classic Zinc Finger 134 161 - -
Vivi726g00001 369 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Vivi726g00001 369 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi726g00001 10 355 C2H2 Transcription Factor Family AT4G06634 62.803 2.77e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi726g00001 zf-C2H2 0.00037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi726g00001 - - zju:107412546 596.66