Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi722g00027 ATGGGTGGGAGCGAGAACTCGAAGGCTATGGTCGTGAATCGTTTGTCTGATTCCGTCAGGGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGCAAGAGGATGTATGGGAATTTGATCCGTAGGGTGAAGCTTCTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGACCCTTTGTGATCAACAGCTTGAAGCTTTTGAAGCTTTAAGGGTTGCTTTGGATTTGGCTATGATCCTTCTAAAGTCTGTTAACCAAGGAAGTAAGCTTTATCAGGCTTTACAAAGGAATGATGCAGCGAATAAGTTCCAACAAGTAACTGAAAAAATTGAAGCTGCATTGAGTGATATTTCGTACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAATTGGTGCATGCTCAGTTCAAAAGAGCCAAAGCTCAAACGGAATTCGCTGATTTACAACTAGATTTGGATATGGCTGTAGCACTGAAAGAAAAAGACCCTGATCCTGCTATACTCAAAAGGCTTTCCGAGAAGCTGTATTTGAGGACTATAAATGATTTAAAGAAAGAGTCTAGTGAATTACACGAATTGGTCATAGCAAGCAATGGAGAATTAGCGGACAGTTTTGAAACAGTCTCGTCTCTTCTTAGGAAACTGAAGGACTGGGTGCTCACTGAAAATCCGGAGATTGATAATGCATATGAGAACGAGAAAGTGTCAGTTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGATGTCCTATATCGCTTGAACTAATGAAAGATCCTGTAATTGTATCTACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACCGAACTTGCCCTAAAACACAACAAACACTTTTGCATACAGCCCTTACTCCTAACTATGTTTTGAAGAGTCTGATTGGTCTATGGTGCGAAAGCAATGGTGTTGAGCTACCAAAGAAGCAAGGTAGCTGTAAAACAACGAAATCCGGAACCAGTCTTTCAGATTGTGACAGAATTGCTATCAAAGCTTTGTTGGATAAACTAACAAGTAACGATATTGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGGAATGCAGATAACCGAGTATGTATTGCTGAGGCAGGAGCGATACCGCTTCTCGTAGAATTGTTGTCTTCTGGTGATCCTCGAACTCAAGAGCACGCCGTTACAGCGCTTCTCAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTTGACGTACTGAGAAACGGAAGCATGGAGGCTAGAGAAAACGCAGCCGCGACTCTCTTTAGTTTATCGGTTCTAGACGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCTATCCCGGCTCTTATAAAGTTACTTTGCGAAGGTACTCCAAGAGGCAAAAAAGATGCGGCTACTGCTATATTTAATCTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTAAAAGCTGGGATAGTTGCTGCATTGATACGGTTTATGAAGGACGCAGGGGGTGGAATGGTTGACGAAGCGCTAGCTATAATGGCAATCCTTGCAGGCCATCATGAAGGCAGGATGGCGATCGGTCAGGCTGAGCCAATTCCTATTTTAGTTGAGGTTATACGAACCGGATCACCGCGAAACCGGGAGAATGCGGCTGCGGTTTTGTGGTCGGTATGTACAGGAGATATAGTGCAATTGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAAGGATTATCAGAGAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAACGAATTGAAGGGGAGGATAGTTTACAAAATTCCTAG 1896 0.4293 MGGSENSKAMVVNRLSDSVREISGLPECQNVCKRMYGNLIRRVKLLSPLFEELKDCDETLCDQQLEAFEALRVALDLAMILLKSVNQGSKLYQALQRNDAANKFQQVTEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDMAVALKEKDPDPAILKRLSEKLYLRTINDLKKESSELHELVIASNGELADSFETVSSLLRKLKDWVLTENPEIDNAYENEKVSVKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCESNGVELPKKQGSCKTTKSGTSLSDCDRIAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSGDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLRNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAALIRFMKDAGGGMVDEALAIMAILAGHHEGRMAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSVCTGDIVQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNS 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi722g00027 631 SUPERFAMILY ARM repeat 345 619 IPR016024 -
Vivi722g00027 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
Vivi722g00027 631 SUPERFAMILY RING/U-box 247 323 - -
Vivi722g00027 631 CDD MLKL_NTD 28 141 - -
Vivi722g00027 631 Pfam U-box domain 248 318 IPR003613 GO:0004842|GO:0016567
Vivi722g00027 631 FunFam RING-type E3 ubiquitin transferase 248 321 - -
Vivi722g00027 631 ProSiteProfiles U-box domain profile. 247 321 IPR003613 GO:0004842|GO:0016567
Vivi722g00027 631 Pfam Armadillo/beta-catenin-like repeat 375 414 IPR000225 GO:0005515
Vivi722g00027 631 Pfam Armadillo/beta-catenin-like repeat 458 496 IPR000225 GO:0005515
Vivi722g00027 631 Gene3D - 331 628 IPR011989 -
Vivi722g00027 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 386 428 IPR000225 GO:0005515
Vivi722g00027 631 FunFam RING-type E3 ubiquitin transferase 459 630 - -
Vivi722g00027 631 FunFam RING-type E3 ubiquitin transferase 345 458 - -
Vivi722g00027 631 PANTHER U BOX DOMAIN-CONTAINING 35 620 - -
Vivi722g00027 631 SMART arm_5 498 538 IPR000225 GO:0005515
Vivi722g00027 631 SMART arm_5 375 415 IPR000225 GO:0005515
Vivi722g00027 631 SMART arm_5 416 456 IPR000225 GO:0005515
Vivi722g00027 631 SMART arm_5 457 497 IPR000225 GO:0005515
Vivi722g00027 631 SMART arm_5 539 579 IPR000225 GO:0005515
Vivi722g00027 631 CDD RING-Ubox_PUB 249 301 IPR045210 -
Vivi722g00027 631 SMART Ubox_2 251 314 IPR003613 GO:0004842|GO:0016567
Vivi722g00027 631 FunFam RING-type E3 ubiquitin transferase 8 121 - -
Vivi722g00027 631 Coils Coil 126 146 - -
Vivi722g00027 631 Gene3D - 10 122 IPR036537 GO:0007166
Vivi722g00027 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi722g00027 11 624 U-box Gene Family AT3G54850 67.154 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi722g00027 - - vvo:131594834 1131.7