Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi722g00002 ATGGCGGCTTCGTCGTCGACATCATTCTTTGGAATCAGAGAAGAAAATCAAAGTCAGATAACTCATCATCTTCATCCTCAATCCACAACTACTTCTGCTACTTCCTCAGCTCCTTCAACCATAGTTCCTCAAAAGAAAAGAAGAAATCAACCAGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCATGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCAACATGTGTTCATCATGATGCTTCAAGAGCTTTAGGAGACCTCACTGGGATTAAAAAGCATTACTCGCGGAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAATGCTCAAAGAAATATGCTGTTCAATCAGATTGGAAAGCACATTCAAAGACTTGTGGGACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCATTAGCACAAGAGAGTGTAATAAGACACCCTAACCCTTTTGGTACTCATCCTCATTTCCATGCCACAAACCACATGACTTTAGGTCAAATTTCTCAACAATTGCAACTTCATCAAAACCAAACATCATCAACTAACAACAACATTCTGCGCCTTGGATCATCGGCACCAAAGTTCGAGCAACACTTAATCTCATCGCCGCCGTTAAATCACTCTACTTCATCATTTGGACAATACTCAGTTCCGTCTTCGTCATCGCCGTTCTTCAATATGAGTGATATTCCAAATCAATCCTTTGAAGAACACCAAGGACAATTCTCAAACAAGCCACAACAACTACATGGTCTAATGCAACTTCCTGATCTTCAAGGTAACGCGACAAGTAATAACTCGAACAATCTTTTCAACCTCATGAGTAATATCCATGATGATCAATTCAACAACAGTCCTCTTATCAGTGATCATCATCAGCAATCACTCTTTATGGTCAACTCAAATATGCAACAACATGATCATCAAAACCAAAACCATAACCTGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAGAAAGCTTCTCAAATTGGCTCAACTAATTCAACCAACAACAACAAAGGTACTACTACTACAACTACCACATCTTTTGGAAATAGAAGTAGTCCAAGTATGGAACTAAATGATCATAACAACAACGATGAACTTCATGGATTGATAAACTCTATGGCCAATGGAAATGGAAACACATCCTCCTTATTTGGCAATGAAAACAACCTTAATATAAGGTTTGGTGAATCTGATAAGTTAACATTAGATTTTCTTGGTGTTGGTGGAATGGTCAGAAACATAAGTGGTGCTGGATTCTCACAAAATGAACAACAACAACAACATGCAATGGCTTCTTTGAATCAAAACCTAAAATCATCTCAGGCTCAGTCAAGTCAACATTTTGGAAGCTCAAATTTGATGCAGTGA 1572 0.3938 MAASSSTSFFGIREENQSQITHHLHPQSTTTSATSSAPSTIVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVIRHPNPFGTHPHFHATNHMTLGQISQQLQLHQNQTSSTNNNILRLGSSAPKFEQHLISSPPLNHSTSSFGQYSVPSSSSPFFNMSDIPNQSFEEHQGQFSNKPQQLHGLMQLPDLQGNATSNNSNNLFNLMSNIHDDQFNNSPLISDHHQQSLFMVNSNMQQHDHQNQNHNLSSPHMSATALLQKASQIGSTNSTNNNKGTTTTTTTSFGNRSSPSMELNDHNNNDELHGLINSMANGNGNTSSLFGNENNLNIRFGESDKLTLDFLGVGGMVRNISGAGFSQNEQQQQHAMASLNQNLKSSQAQSSQHFGSSNLMQ 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi722g00002 523 Coils Coil 491 511 - -
Vivi722g00002 523 Gene3D Classic Zinc Finger 127 207 - -
Vivi722g00002 523 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Vivi722g00002 523 MobiDBLite consensus disorder prediction 1 51 - -
Vivi722g00002 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Vivi722g00002 523 FunFam protein indeterminate-domain 12-like 53 121 - -
Vivi722g00002 523 Gene3D Classic Zinc Finger 53 126 - -
Vivi722g00002 523 SMART c2h2final6 74 96 IPR013087 -
Vivi722g00002 523 SMART c2h2final6 150 170 IPR013087 -
Vivi722g00002 523 SMART c2h2final6 115 145 IPR013087 -
Vivi722g00002 523 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Vivi722g00002 523 Pfam Zinc-finger double-stranded RNA-binding 74 96 IPR022755 -
Vivi722g00002 523 MobiDBLite consensus disorder prediction 503 523 - -
Vivi722g00002 523 MobiDBLite consensus disorder prediction 1 57 - -
Vivi722g00002 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 507 IPR031140 -
Vivi722g00002 523 MobiDBLite consensus disorder prediction 396 421 - -
Vivi722g00002 523 SUPERFAMILY beta-beta-alpha zinc fingers 73 170 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi722g00002 69 482 C2H2 Transcription Factor Family AT2G02080 47.368 1.65e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi722g00002 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi722g00002 K25870 - gmx:102663407 565.844