Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi720g00009 ATGAACTCGGACACGCTTCCCTCCTCCACGGCGTCGTTTTGGTGCTATAGCTGCACGCGTTTCGTTCACCTTTTGGATCACAACGACGTCGTTTGTCCCCACTGCACAAGCGGTTTTGTGGAAGAGATTCACGCCGGTAACTCTCCGGCTGTTTCCTTGTTCGCAGACGGAATCCATTCTTCCAGGAGACAAACCTCCCGCCGGAGACGTCGTAACGCTGGCAACAGATCGCCTTTCAATCCTGTAATCGTGCTTCGCGGACCTAGAGAGGACAACGGCGGTAGCGGCGGCGGTGAAAGTGAGGGGAGTAGCTTTGAATTGTATTATGAAGACGGCAACGGCGCCGATCTACGTCCGCTCCCGCCGAATATGTCAGAGTTATTGCTTGGTTCAGGTTTTGATCGGTTGCTTGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGGGCGGAGAATCCACCAGCGTCAAAGGCGGCGATAGAGTCAATACCAACCGTCGATATCACCGACGCAGAGGTGGAAGAAGAAACGCACTGTGCGGTTTGCAAAGAAGCATTCGAGCTTGGTTCGGAGGCGCGTAAGATGCCGTGCAAGCATCTTTACCATTCCGATTGCATTCTCCCATGGCTCTCTATGCGAAACTCATGCCCGGTCTGCCGCCACGAGTTACCTTCCGATCAAAACCAAAATCAAAACCCCTCGGAGACTAGATTATCTGGTCAGAGTCAGACCGACGAAGAAGCGGTTGGTTTGACGATATGGAGATTACCAGGAGGTGGATTCGCCGTCGGGAGATTCACCGGTGGCCGGAGAGCCGGTGAGATTCAGTTACCGGTTGTTTACACAGAGATGGACGGCGGTAATAACTCAAACGAAGATTCTAGAAGCGTCTCTTTGGCAGTAGGAAGCAATAGAGTTAGAGAGAGACGTGGCTTTCGCAGAATTTTTCGTAATTTTTTATCGTTTTTTGGTTCCGTTAATTTAAACCGTAGCCGTAGCGTTTCTGGTTCTGGTTCATTTTTTAGTAGAAGTTCACGGCGAAGAAGCAGAACTTGGGTAACGGAATAA 1071 0.5061 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCTSGFVEEIHAGNSPAVSLFADGIHSSRRQTSRRRRRNAGNRSPFNPVIVLRGPREDNGGSGGGESEGSSFELYYEDGNGADLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVDITDAEVEEETHCAVCKEAFELGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQNQNQNPSETRLSGQSQTDEEAVGLTIWRLPGGGFAVGRFTGGRRAGEIQLPVVYTEMDGGNNSNEDSRSVSLAVGSNRVRERRGFRRIFRNFLSFFGSVNLNRSRSVSGSGSFFSRSSRRRSRTWVTE 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi720g00009 356 SUPERFAMILY RING/U-box 160 230 - -
Vivi720g00009 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 227 IPR013083 -
Vivi720g00009 356 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Vivi720g00009 356 MobiDBLite consensus disorder prediction 224 245 - -
Vivi720g00009 356 MobiDBLite consensus disorder prediction 60 105 - -
Vivi720g00009 356 Pfam Protein of unknown function (DUF1117) 250 350 IPR010543 -
Vivi720g00009 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 59 225 - -
Vivi720g00009 356 FunFam E3 ubiquitin-protein ligase RING1-like 142 227 - -
Vivi720g00009 356 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Vivi720g00009 356 SMART ring_2 180 220 IPR001841 -
Vivi720g00009 356 CDD RING-H2_RNF126-like 180 221 - -
Vivi720g00009 356 Pfam Ring finger domain 179 221 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi720g00009 116 232 C3H Transcription Factor Family AT5G01980 43.590 1.94e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi720g00009 K11982 - gmx:100804867 405.216