Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi718g00015 ATGGGTATTTCCTGGAGCAGTAGTAGAAGAAGAAACAATTTCATTCACAACCCACCTCAACAACCACCCTCACTTCCACCACCACCACCACCACCGCCTCATTATTACTACTCAACCGAATCACATCCACCACCACCACCACCTCACCAGCAAGGTTACTATTACCCCTCAACCACCACCGGCTATGCCACTCCCCACCCTCCTCCTCCTTCTCTTCAACCTCATACCCATTCATTTTACTTCTCTAACCCTAATTCAACTATCAACTACGCCAATCCTCGTGTTATGTTCCATCCTTCTTACTATGTAAATCAACAACATGCCTGGGGTCCACCTCCTCCTCTTCCTTTACCTTCTTCTTCCACACCGCCCCCTTACGTTGATCATCAAACTGCGAAGAAGATTAGGAATCATGTTAATGTTCATAAGGATACTTTGCGACTTGAAGTTGATGAGCATAACCCTGATCACCATCTCGTTTCTTTCGTTTTCGACGCTGTTTATGATGGCAGCATTACTGTCTCCTACTTTGCGAAGGAAGAAGATAAATGTAGGTTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGGGAAAGGAGTTGGCCAGAAATTTGCCCAGCCTTCAGGAACAGGGATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACATGTTTGGAAACTCCCTCGGAAAACGAAACACCTAAAAATTCCGATGATTCCACGCTAAATGCATCACCTCACATGCAAATAACTCAAGCTGTCTTGGAGAAATGTAATGATGCTTTCCAGATAAAAGTAGTTAAACAGATTCTGTGGATTGATGGTGTTCGTTATGAGTTGAGAGAGCTATATGGAATAGGAAACTCAGAAGCTGCAGGATTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGATTGTGCGAAAGCTCTACGGCTTCAATCCAATAAATGCCCTATATGCCGTCAACCCATTGAGGAACTTATCGAGATCAAGGTGAAGAGTGGCGATCCATGA 1143 0.4427 MGISWSSSRRRNNFIHNPPQQPPSLPPPPPPPPHYYYSTESHPPPPPPHQQGYYYPSTTTGYATPHPPPPSLQPHTHSFYFSNPNSTINYANPRVMFHPSYYVNQQHAWGPPPPLPLPSSSTPPPYVDHQTAKKIRNHVNVHKDTLRLEVDEHNPDHHLVSFVFDAVYDGSITVSYFAKEEDKCRFVPLFPDAFVPVKVPFGKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSENETPKNSDDSTLNASPHMQITQAVLEKCNDAFQIKVVKQILWIDGVRYELRELYGIGNSEAAGFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRLQSNKCPICRQPIEELIEIKVKSGDP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi718g00015 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Vivi718g00015 380 SUPERFAMILY RING/U-box 324 370 - -
Vivi718g00015 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Vivi718g00015 380 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Vivi718g00015 380 SMART ring_2 325 363 IPR001841 -
Vivi718g00015 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 374 IPR013083 -
Vivi718g00015 380 PANTHER MAHOGUNIN 1 374 IPR045194 GO:0061630
Vivi718g00015 380 MobiDBLite consensus disorder prediction 19 52 - -
Vivi718g00015 380 MobiDBLite consensus disorder prediction 1 18 - -
Vivi718g00015 380 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
Vivi718g00015 380 MobiDBLite consensus disorder prediction 1 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi718g00015 99 379 C3H Transcription Factor Family AT3G06140 60.554 5.41e-113 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi718g00015 - - gmx:100786054 498.434