LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi717g00010	ATGGAAAGAGAATTTGAAAGAGGTTACATAAAAAAAGGACCATGGAGTAGTGAAGAAGATGAAGTGTTACTGAAACATGTTAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTTTTGCCAAGAACTGGAAAATCTTGTCGGTTGAGATGGGTTAACAAGCTTAGACCAAACTTGAAAACAGGGTGCAAGTTTTCAGCAGAGGAGGAAAGGGTGGTGATTGAATTACAGGAGCAATTTGGAAACAAATGGGCGAAAATTGCTACGTATTTGGAAGGGAGAACAGACAATGATGTGAAGAATTTTTGGAGTAGCAGGAGAAAAAGGATGGAGAGGTCGTCTCCAAGGACACCATCACCATCACCAAAGCAGCAGAAAAACAAAGGAAAAGATGTTGTTAATAATAATCAAGTGAAAGTAGAAAAGGTTCCTGAATGTGGTTCTAATCAGCTAGAGGAAAACTTTACTTACCCTACTTCTTGTATGGGAAACAAAGAGGAGTTCAAGATGGTGAATCTGCCAGATTTAACAAAGCCAAACTACCAAAATATGGAAAGTGACATTAATGGAATTGAGTTTGAGGCTACTCCACTTCACACGGTACCGTCATTTGAGTCTTCGTCGGCGGCATACAACTTTCCTCTACACCCAGAACCACATATGGACTTTCCACTACTCCCAGAGTGTCAGGACCTTGTTCAAGAGCCCTTTGATCCCAATTTTATGGACATGTTTGAGCAGAAAAAGGATTCAGATTGTGTGTGGAGCCAGAAGCTTGGGACCAGGTTGCCAACTCTTGGAACTGAAGGAAATTCTCAGAGTAGTTCAAATTGCTTGTTTCAGGACTTCTCAACAGAGTTTTTTGAATACTTTGCTTAG	891	0.4097	MEREFERGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQEQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRMERSSPRTPSPSPKQQKNKGKDVVNNNQVKVEKVPECGSNQLEENFTYPTSCMGNKEEFKMVNLPDLTKPNYQNMESDINGIEFEATPLHTVPSFESSSAAYNFPLHPEPHMDFPLLPECQDLVQEPFDPNFMDMFEQKKDSDCVWSQKLGTRLPTLGTEGNSQSSSNCLFQDFSTEFFEYFA	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi717g00010	296	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	63	IPR017930	-
	Vivi717g00010	296	PANTHER	TRANSCRIPTION FACTOR DUO1	5	295	-	-
	Vivi717g00010	296	ProSiteProfiles	Myb-like domain profile.	7	59	IPR001005	-
	Vivi717g00010	296	FunFam	MYB transcription factor	12	64	-	-
	Vivi717g00010	296	Pfam	Myb-like DNA-binding domain	68	108	IPR001005	-
	Vivi717g00010	296	Pfam	Myb-like DNA-binding domain	12	57	IPR001005	-
	Vivi717g00010	296	FunFam	Transcription factor GAMYB	67	137	-	-
	Vivi717g00010	296	SUPERFAMILY	Homeodomain-like	10	107	IPR009057	-
	Vivi717g00010	296	Gene3D	-	67	143	-	-
	Vivi717g00010	296	Gene3D	-	11	64	-	-
	Vivi717g00010	296	SMART	sant	65	113	IPR001005	-
	Vivi717g00010	296	SMART	sant	11	61	IPR001005	-
	Vivi717g00010	296	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	115	IPR017930	-
	Vivi717g00010	296	CDD	SANT	14	59	IPR001005	-
	Vivi717g00010	296	CDD	SANT	68	107	IPR001005	-
	Vivi717g00010	296	MobiDBLite	consensus disorder prediction	119	138	-	-
	Vivi717g00010	296	ProSiteProfiles	Myb-like domain profile.	68	111	IPR001005	-
	Vivi717g00010	296	MobiDBLite	consensus disorder prediction	105	139	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi717g00010	10	116	MYB Transcription Factor Family	AT3G60460	83.178	6.11e-62	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vivi717g00010		Myb_DNA-binding	4.3e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi717g00010	K09422		-	gmx:121173231	400.593