Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi708g00004 ATGAGTAATGGGATGAAGAAAATGGCAGCTTCACCTTTCCTTCTACTTCGACTCCGCTTGGCTTCTTCTTCTTCCTCACGCTTCACTAAACCATTTCACCTTTTCAAATTCTCCTTCTCCACCACCTCACCGCCGAATCCACCTCCAATTCAAGTTTCTCTCACTGACTCAACCGGTCGCGCCGTCTTCGCAACTCGCCCAATCCCTACCGGCGATCTCATCCACACCGCGGAACCCGCCGTCTGTCATCCCTCACCCTCCGCCCTCCATCCCGTCTGTTACTCTTGCCTCACCAGACTCCCCGCCTCCCTTCCTCAATGCTCCCCCTTTTGCTCTCACCAATGCCACCACCGCAGTAAGGAATACTACGATGTGGAGATGAAAGCGGATTGGACAGATTTTGATAGCTATTGCCGGAACCAAGGTTTAAAATATCCCTTTCTGGTAAAGCGGTTGGCGTGCATGATCATATCAGGAGTTTCCAGAAGTGACAGTCTTGACATACTTCAACCTGCCAATTTGACACCTGAGATGATTTTAGAGATGGAAAAGGGGTTCGCCCTGCTAAAGAATGCCTTCACAAAGGCACTTATTGCAGATGAACAGATTGCTTTTTTAACCAAGCAATGGTACATTGGTGTTTTGGCGCGGATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCGGTTGGAAATGCTGTCTATATACTCCCTTCTTTCTATAATCATGATTGTGATCCTAATGCACACATTATATGGATAGATAACGCAAAGGCAAAACTGAAGGCTCTCCGGGACATTGATGAAGGTGAAGAACTGAGAATCTGCTATATTGATGCCAGTATGGACCGCGATGCTCGGCGAGAACTATTGTTTCAAGGTTTTGGTTTTCAATGTAATTGTAGTAGATGCTTGCATGGTGATTAG 987 0.465 MSNGMKKMAASPFLLLRLRLASSSSSRFTKPFHLFKFSFSTTSPPNPPPIQVSLTDSTGRAVFATRPIPTGDLIHTAEPAVCHPSPSALHPVCYSCLTRLPASLPQCSPFCSHQCHHRSKEYYDVEMKADWTDFDSYCRNQGLKYPFLVKRLACMIISGVSRSDSLDILQPANLTPEMILEMEKGFALLKNAFTKALIADEQIAFLTKQWYIGVLARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAVGNAVYILPSFYNHDCDPNAHIIWIDNAKAKLKALRDIDEGEELRICYIDASMDRDARRELLFQGFGFQCNCSRCLHGD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi708g00004 328 ProSiteProfiles SET domain profile. 48 298 IPR001214 GO:0005515
Vivi708g00004 328 Gene3D SET domain 61 324 IPR046341 -
Vivi708g00004 328 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 46 326 - -
Vivi708g00004 328 CDD SET_SMYD 237 324 - -
Vivi708g00004 328 SUPERFAMILY SET domain 47 322 IPR046341 -
Vivi708g00004 328 Gene3D - 92 140 - -
Vivi708g00004 328 SMART set_7 48 304 IPR001214 GO:0005515
Vivi708g00004 328 Pfam SET domain 59 297 IPR001214 GO:0005515
Vivi708g00004 328 Gene3D - 141 222 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi708g00004 SET 8.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi708g00004 - - tpra:123906125 529.25