Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi703g00029 ATGGGGAGGAGTAGGGTTAGGAATCCGAGGAAAAGATTGTTGAAGATAATGAAGTGTCTTTGCTCAGGGGAGGTTGTGAAAGAAGAAGATAGAATGGTTCCTGATTCGTCGGAATCTCTTGCGACGAAGGATTATTATTCTGCGACGGGGAGTGGGATTTCTGGACAAGATGGACAGGTTGTGAGGAGGTTGGATTCTGGTAATATTGAGCAAGCTGAATCGTCGTTGCGTGAGAGTGGTATCTTGAATTATGAGGAAGCTAGAGCTTTGTTAGGGAGATATGAATATCAGGAAGGAAACATAGAAGCTGCTTTGCATGTCTTTGAAGGCATAAACATAGCTGCTGTGACTCCCAAGATAAATGATTTTCTAGCCAAAAGTAGAGAGCGTCCCAAGAGACGCTCTCGGAGTTACACTCCTCCATCAATTTCTATACATACAGCTGGATTACTGCTAGAAGCGATTTTGCTAAAAGCAAAATGTTTGCAGGTTTTTGGAAGGTTTGAAGAGTCTGCCCAAACATGCAAGGTTATTCTGGACATGGTTGAGTCTTCTTTACCTGAAGGCTTGCCTAGAAACTTTGGCGCCGAATGTAAATTGCAGGAGACTTTAAGTAAGGCAGCTGAGCTACTTCCAGAGTTATGGAAACTTGCTGATTGTCCACGAGAAGTTATTTTGTCTTACCGGCGCGCACTCCTTCATCGATGGAATCTTGATGCAGAGACCACAGCAAAAATTCAGAAAGAATTTGCCATTTTTCTTCTATATTGTGGAGGGGAAGAAATTCTCCCAGATCTTCGTGCCCATATCGACAGTTCATTTGTACCAAGAAATAACACTGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAACATCTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGAGCACCTTTCATTTGCCCTATCGGTTTCCGGGAATTTGACAGCTTTAGCCAACCAATGGGAAGAGTTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGGGCAGATAAGGACTTGGTGGCCTTTAATCTTCTTAAAAAGTTGTTGAGTAACGGAGAGGATCCAAAACATGTTCCTGCTTTGTTAACAGCTTCTAAGATATGCTGTGAGAACCCTGACCTTGCAAAAGATGGGGTTAGCTACGCTACCAGAGTGCGTGAGAACTTGGGTGAAAGATGCAATCAGTTGGAAAGTCTCGCCAATTGCTTACTCGGTGTTTCACTTTCAACATACTCAAAATTGGCTGTTTCTAATTCTGAGATGTTTGAGAAACAATCTGAGGCACTCCGATCATTAGAAATTGCAAGCACTATGACCAAAATGAATGACCCTCTTGTACTTTACTATTTAAGTCTAGAATATGCAGAGCAAAGGAAGTTGGATTCTGCGCTTCATTATGCAAAGCGCTTTCTTAACTTAGAAGCGGGGTCTAATATTAAAGGCTGGTTGTTGTTAGCCCGAATATTATCAGCACAAAAACAGTTTTTGGATGCTGAATCTATTGTTGATGCTGCTTTGGATCGGACTGGAATATGGGATCAAGGAATTTTGTTGCGAACCAAAGCTAAACTTCAAATTGCACAGGGGAAGTTGCCAAGTGCCATTGAAACATACATTCAGCTTCTTGCTATTCTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAAACAAGCTATACAAGGACAACAGAGATCATGCTAGGAGCTTGGAAGTTGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCAAGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAGACTATACTCTGCTTCTAGATGCCATGTAATAGGTACTATGCTTGAAGGAAAGGGTCTTTACAAAGAGGCTCTAAAAGCTTTTGTTGACGCATTGAACCTTGATCCCGGACATGTCCCTAGCTTGATCTCAACCGCTGTGGTTCTTAAACGGTTTGGTACTCAATCATATCCTGCTGTTAGAAGCTTTCTGATGGGTGCACTAAGGCTTGACAGAACTAATACTTCAGCTTGGTATAATCTTGGCATTCTTCACAAGGAAGAAGGTAGAATATTAGAAGCTGCAGAATGTTTTCAGGCTGCAAACTCTCTCGAAGAATCAGAGCCAGTGGAACCTTTCAGATGA 2190 0.4155 MGRSRVRNPRKRLLKIMKCLCSGEVVKEEDRMVPDSSESLATKDYYSATGSGISGQDGQVVRRLDSGNIEQAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGINIAAVTPKINDFLAKSRERPKRRSRSYTPPSISIHTAGLLLEAILLKAKCLQVFGRFEESAQTCKVILDMVESSLPEGLPRNFGAECKLQETLSKAAELLPELWKLADCPREVILSYRRALLHRWNLDAETTAKIQKEFAIFLLYCGGEEILPDLRAHIDSSFVPRNNTEEAILLLMILLRKTSLNKIEWDPSILEHLSFALSVSGNLTALANQWEELLPGTINRRERYHALALCYYGADKDLVAFNLLKKLLSNGEDPKHVPALLTASKICCENPDLAKDGVSYATRVRENLGERCNQLESLANCLLGVSLSTYSKLAVSNSEMFEKQSEALRSLEIASTMTKMNDPLVLYYLSLEYAEQRKLDSALHYAKRFLNLEAGSNIKGWLLLARILSAQKQFLDAESIVDAALDRTGIWDQGILLRTKAKLQIAQGKLPSAIETYIQLLAILLVQRKTFGSRNKLYKDNRDHARSLEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIRLYSASRCHVIGTMLEGKGLYKEALKAFVDALNLDPGHVPSLISTAVVLKRFGTQSYPAVRSFLMGALRLDRTNTSAWYNLGILHKEEGRILEAAECFQAANSLEESEPVEPFR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi703g00029 729 Gene3D Tetratricopeptide repeat domain 58 583 IPR011990 GO:0005515
Vivi703g00029 729 SUPERFAMILY TPR-like 440 559 IPR011990 GO:0005515
Vivi703g00029 729 SUPERFAMILY TPR-like 532 720 IPR011990 GO:0005515
Vivi703g00029 729 SMART tpr_5 459 492 IPR019734 GO:0005515
Vivi703g00029 729 SMART tpr_5 494 527 IPR019734 GO:0005515
Vivi703g00029 729 SMART tpr_5 620 653 IPR019734 GO:0005515
Vivi703g00029 729 SMART tpr_5 586 619 IPR019734 GO:0005515
Vivi703g00029 729 SMART tpr_5 690 723 IPR019734 GO:0005515
Vivi703g00029 729 PANTHER PROTEIN NPG1 17 729 IPR043376 -
Vivi703g00029 729 Pfam Tetratricopeptide repeat 691 721 IPR019734 GO:0005515
Vivi703g00029 729 Pfam Tetratricopeptide repeat 621 652 IPR019734 GO:0005515
Vivi703g00029 729 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Vivi703g00029 729 Gene3D Tetratricopeptide repeat domain 585 725 IPR011990 GO:0005515
Vivi703g00029 729 ProSiteProfiles TPR repeat profile. 690 723 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi703g00029 6 729 Calmodulin-binding Proteins AT4G28600 55.121 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi703g00029 K21843 - gmx:100809498 1057.74