Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi703g00022 ATGGAGGATTCTGGAAAATCCATCAACAACATCGCGGGTAAAAGTAGCAGTAAATTATTGAATCCATGGATGCTCCATTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTTTTCAAGCAACCAGTTTTGCTTCCATGCAACCACTTGTTCTGCAGTTCTTGCATGGCGGAGAGTGCAACGATTGGTTCTGAATGTGCTCTCTGTAACACCAAATACGCTCAAATAGATTTAAGGCATGTGCCTTTTGTGGACAATATGGTAACTATTTATAAGAACTTGGATGCAACCTTTTGTGCTAATACATTTCAGCAACGCTCATCTGATGATAGGATGGTTTTGGAGCGGTGCCAAACTCTTCAGAATTCAGCTTGTAGTAATAAGAATACTGATAAGGTTCTGCTGAATTCATGTATGTCAAGTGAGTTTGGGGCTGCTGACCTTATTGTCAGGAATAGTAATTCAATAACATGTTCTCAGAAAGAAATTGGGGATCGTGTTGAAATGGATTTGAATCAAGTGACAGAATCAGCTCCGGACAGCCCTCCGTTTTGTGACACCAAAGGCTCTGATAACTGCTGCAGTTGTCAAGACAGTGAGCAGCCACTCAATGTTATGAAATCTGAATATTCATCATTAAAAAGTGCAACCACAGGGAAAAGTGAGTTGAAAGAAAAAATGGCTCAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAACGAGGGTCTTAGGAGAGATATGAAGAAACAAAAAAATCTTCCTAATGGTGATGCTATTATTCAACAAAGCACCTCATATCATAATAAGCCTGTAGATTCCCGCTGTGACTTGGACCTTAGATCTGAAAAGGACCCTGGTGTAATCATCTCTTCAAATACACCAAATGACTTGTGCCCAAGTACAAGCATGTGCTCGTTTTGCCAGTCCTTTAATATTTCAGAGGCTACTGGGCCTATGCTTCATTATGAAGAAGGGATTTTAGTTACAGGAGATGCTGCAATGCAACCAAATGTTATGCATGTGCATAAAGTTTGTATTGACTGGGCTCCACAAGTTTACTTTGTTGGTGAAACTGTTAAGAATTTGAAGAAAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCCAATGCAGTCTAAAGGGAGCTGCTCTTGGTTGCTTTGTCAAATCATGTAAAAGAACTTATCATGTCCCTTGTGCAATGAACATCTCTACCTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCCTCTCATTCAGATGTCAAATTTCCAAGTGAGGACTCCAGTCGTAAGAAAAAGTCAACTCAGAAGCATCCTGTTTCATCTCAACTGCCATTTCAACAGCCAAACAACCTGTTGGGAGGTTTAAAGAATGATGGTAAAAAGATGGTTTTCTGTGGATCTGCCCTATCAAATGAAGAAAAGGTGCTTTTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGACAAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCTATGGATGCAAATGGGGCATGCTCCAGGACGATAAAAGTTTTGAAGGCAATTCTAAATGGACAATGGATCCTTAAAGTAGACTGGATAAGAGCATGCATGGAAGAGACTTATCTTGTAGATGAAGAATGTTATGAAGTTGATCTAGACAATCATGGGTGCCGTGGTGGCCCAAAAGCTGGCAGACTTATGGCACTGGCCAAGGAGCCAAAGATATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGACTATGATTTGAGTTTTAAGAAATATCTTGAAGATTTAGTTGAAGTGGGAGAAGGTGCTGTTTTGAAAAGCAAAGATCAATTGGAAGTTAGAATAGATGCAAACGTACTGGTGGTTTACAATATCGATCCCCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTGAGTGAAGCAGAGGATCTAGCTGCCAATACTGGTTACCAAGTCATTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGCAAACTGCAGCCTTTTGTTAGTTAA 2055 0.4107 MEDSGKSINNIAGKSSSKLLNPWMLHFQKLALELKCPLCLSFFKQPVLLPCNHLFCSSCMAESATIGSECALCNTKYAQIDLRHVPFVDNMVTIYKNLDATFCANTFQQRSSDDRMVLERCQTLQNSACSNKNTDKVLLNSCMSSEFGAADLIVRNSNSITCSQKEIGDRVEMDLNQVTESAPDSPPFCDTKGSDNCCSCQDSEQPLNVMKSEYSSLKSATTGKSELKEKMAQFRSESSASENEGLRRDMKKQKNLPNGDAIIQQSTSYHNKPVDSRCDLDLRSEKDPGVIISSNTPNDLCPSTSMCSFCQSFNISEATGPMLHYEEGILVTGDAAMQPNVMHVHKVCIDWAPQVYFVGETVKNLKKEVARGAKLKCTQCSLKGAALGCFVKSCKRTYHVPCAMNISTCRWDHVDYLLLCPSHSDVKFPSEDSSRKKKSTQKHPVSSQLPFQQPNNLLGGLKNDGKKMVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAAMDANGACSRTIKVLKAILNGQWILKVDWIRACMEETYLVDEECYEVDLDNHGCRGGPKAGRLMALAKEPKIFSGLKFYFSGDYDLSFKKYLEDLVEVGEGAVLKSKDQLEVRIDANVLVVYNIDPPQGCKLGEEVSILWQRLSEAEDLAANTGYQVIGHTWILESIAACKLQPFVS 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi703g00022 684 ProSiteProfiles BRCT domain profile. 575 684 IPR001357 -
Vivi703g00022 684 Gene3D BRCT domain 465 570 IPR036420 -
Vivi703g00022 684 SMART ring_2 36 73 IPR001841 -
Vivi703g00022 684 MobiDBLite consensus disorder prediction 223 255 - -
Vivi703g00022 684 CDD BRCT_Bard1_rpt1 469 547 - -
Vivi703g00022 684 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vivi703g00022 684 ProSiteProfiles Extended PHD (ePHD) domain profile. 304 424 IPR034732 -
Vivi703g00022 684 Coils Coil 224 244 - -
Vivi703g00022 684 Pfam BRCA1 C Terminus (BRCT) domain 465 541 IPR001357 -
Vivi703g00022 684 SUPERFAMILY BRCT domain 579 681 IPR036420 -
Vivi703g00022 684 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
Vivi703g00022 684 MobiDBLite consensus disorder prediction 218 258 - -
Vivi703g00022 684 ProSiteProfiles BRCT domain profile. 464 554 IPR001357 -
Vivi703g00022 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 108 IPR013083 -
Vivi703g00022 684 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 306 682 IPR031099 GO:0006281|GO:0006974
Vivi703g00022 684 Gene3D BRCT domain 577 677 IPR036420 -
Vivi703g00022 684 Pfam PHD-like zinc-binding domain 345 424 - -
Vivi703g00022 684 FunFam Breast cancer type 1 susceptibility protein homolog 465 571 - -
Vivi703g00022 684 MobiDBLite consensus disorder prediction 429 456 - -
Vivi703g00022 684 SUPERFAMILY RING/U-box 33 96 - -
Vivi703g00022 684 SUPERFAMILY BRCT domain 468 555 IPR036420 -
Vivi703g00022 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 426 IPR013083 -
Vivi703g00022 684 SMART BRCT_7 454 544 IPR001357 -
Vivi703g00022 684 SMART BRCT_7 577 677 IPR001357 -
Vivi703g00022 684 Pfam BRCT domain, a BRCA1 C-terminus domain 577 681 IPR001357 -
Vivi703g00022 684 Pfam Zinc finger, C3HC4 type (RING finger) 33 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi703g00022 498 611 Core DNA Replication Machinery Family AT4G02110 29.412 5.29e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi703g00022 K10683 - gmx:100784883 872.848