Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi703g00021 ATGGAGGATTCTGGAAAATCCATCAACAACATCGCGGGTAAAAGTAGCAGTAAATTATTGAATCCATGGATGCTCCATTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTTTTCAAGCAACCAGTTTTGCTTCCATGCAACCACTTGTTCTGCAGTTCTTGCATGGCGGAGAGTGCAACGATTGGTTCTGAATGTGCTCTCTGTAACACCAAATACGCTCAAATAGATTTAAGGCATGTGCCTTTTGTGGACAATATGGTAACTATTTATAAGAACTTGGATGCAACCTTTTGTGCTAATACATTTCAGCAACGCTCATCTGATGATAGGATGGTTTTGGAGCGGTGCCAAACTCTTCAGAATTCAGCTTGTAGTAATAAGAATACTGATAAGGTTCTGCTGAATTCATGTATGTCAAGTGAGTTTGGGGCTGCTGACCTTATTGTCAGGAATAGTAATTCAATAACATGTTCTCAGAAAGAAATTGGGGATCGTGTTGAAATGGATTTGAATCAAGTGACAGAATCAGCTCCGGACAGCCCTCCGTTTTGTGACACCAAAGGCTCTGATAACTGCTGCAGTTGTCAAGACAGTGAGCAGCCACTCAATGTTATGAAATCTGAATATTCATCATTAAAAAGTGCAACCACAGGGAAAAGTGAGTTGAAAGAAAAAATGGCTCAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAACGAGGGTCTTAGGAGAGATATGAAGAAACAAAAAAATCTTCCTAATGGTGATGCTATTATTCAACAAAGCACCTCATATCATAATAAGCCTGTAGATTCCCGCTGTGACTTGGACCTTAGATCTGAAAAGGACCCTGGTGTAATCATCTCTTCAAATACACCAAATGACTTGTGCCCAAGTACAAGCATGTGCTCGTTTTGCCAGTCCTTTAATATTTCAGAGGCTACTGGGCCTATGCTTCATTATGAAGAAGGGATTTTAGTTACAGGAGATGCTGCAATGCAACCAAATGTTATGCATGTGCATAAAGTTTGTATTGACTGGGCTCCACAAGTTTACTTTGTTGGTGAAACTGTTAAGAATTTGAAGAAAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCCAATGCAGTCTAAAGGGAGCTGCTCTTGGTTGCTTTGTCAAATCATGTAAAAGAACTTATCATGTCCCTTGTGCAATGAACATCTCTACCTGCCGCTGGGATCATGTGGATTATCTCTTGCTATGTCCCTCTCATTCAGATGTCAAATTTCCAAGTGAGGACTCCAGTCGTAAGAAAAAGTCAACTCAGAAGCATCCTGTTTCATCTCAACTGTATGTTTATTTGAAGCCATTTCAACAGCCAAACAACCTGTTGGGAGGTTTAAAGAATGATGGTAAAAAGATGGTTTTCTGTGGATCTGCCCTATCAAATGAAGAAAAGGTGCTTTTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGACAAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCTATGGATGCAAATGGGGCATGCTCCAGGACGATAAAAGTTTTGAAGGCAATTCTAAATGGACAATGGATCCTTAAAGTAGACTGGATAAGAGCATGCATGGAAGAGACTTATCTTGTAGATGAAGAATGTTATGAAGTTGATCTAGACAATCATGGGTGCCGTGGTGGCCCAAAAGCTGGCAGACTTATGGCACTGGCCAAGGAGCCAAAGATATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGACTATGATTTGAGTTTTAAGAAATATCTTGAAGATTTAGTTGAAGTGGGAGAAGGTGCTGTTTTGAAAAGCAAAGATCAATTGGAAGTTAGAATAGATGCAAACGTACTGGTGGTTTACAATATCGATCCCCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTGAGTGAAGCAGAGGATCTAGCTGCCAATACTGGTTACCAAGTCATTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGCAAACTGCAGCCTTTTGTTAGTTAA 2070 0.4092 MEDSGKSINNIAGKSSSKLLNPWMLHFQKLALELKCPLCLSFFKQPVLLPCNHLFCSSCMAESATIGSECALCNTKYAQIDLRHVPFVDNMVTIYKNLDATFCANTFQQRSSDDRMVLERCQTLQNSACSNKNTDKVLLNSCMSSEFGAADLIVRNSNSITCSQKEIGDRVEMDLNQVTESAPDSPPFCDTKGSDNCCSCQDSEQPLNVMKSEYSSLKSATTGKSELKEKMAQFRSESSASENEGLRRDMKKQKNLPNGDAIIQQSTSYHNKPVDSRCDLDLRSEKDPGVIISSNTPNDLCPSTSMCSFCQSFNISEATGPMLHYEEGILVTGDAAMQPNVMHVHKVCIDWAPQVYFVGETVKNLKKEVARGAKLKCTQCSLKGAALGCFVKSCKRTYHVPCAMNISTCRWDHVDYLLLCPSHSDVKFPSEDSSRKKKSTQKHPVSSQLYVYLKPFQQPNNLLGGLKNDGKKMVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAAMDANGACSRTIKVLKAILNGQWILKVDWIRACMEETYLVDEECYEVDLDNHGCRGGPKAGRLMALAKEPKIFSGLKFYFSGDYDLSFKKYLEDLVEVGEGAVLKSKDQLEVRIDANVLVVYNIDPPQGCKLGEEVSILWQRLSEAEDLAANTGYQVIGHTWILESIAACKLQPFVS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi703g00021 689 SUPERFAMILY BRCT domain 584 686 IPR036420 -
Vivi703g00021 689 SUPERFAMILY BRCT domain 473 560 IPR036420 -
Vivi703g00021 689 SMART ring_2 36 73 IPR001841 -
Vivi703g00021 689 Pfam PHD-like zinc-binding domain 345 424 - -
Vivi703g00021 689 SMART BRCT_7 582 682 IPR001357 -
Vivi703g00021 689 SMART BRCT_7 459 549 IPR001357 -
Vivi703g00021 689 MobiDBLite consensus disorder prediction 223 255 - -
Vivi703g00021 689 Pfam BRCA1 C Terminus (BRCT) domain 470 546 IPR001357 -
Vivi703g00021 689 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 305 687 IPR031099 GO:0006281|GO:0006974
Vivi703g00021 689 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Vivi703g00021 689 Gene3D BRCT domain 582 682 IPR036420 -
Vivi703g00021 689 ProSiteProfiles BRCT domain profile. 469 559 IPR001357 -
Vivi703g00021 689 FunFam Breast cancer type 1 susceptibility protein homolog 470 576 - -
Vivi703g00021 689 ProSiteProfiles Extended PHD (ePHD) domain profile. 304 424 IPR034732 -
Vivi703g00021 689 SUPERFAMILY RING/U-box 33 96 - -
Vivi703g00021 689 Coils Coil 224 244 - -
Vivi703g00021 689 ProSiteProfiles BRCT domain profile. 580 689 IPR001357 -
Vivi703g00021 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 108 IPR013083 -
Vivi703g00021 689 Pfam BRCT domain, a BRCA1 C-terminus domain 582 686 IPR001357 -
Vivi703g00021 689 CDD BRCT_Bard1_rpt1 474 552 - -
Vivi703g00021 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 426 IPR013083 -
Vivi703g00021 689 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
Vivi703g00021 689 MobiDBLite consensus disorder prediction 218 258 - -
Vivi703g00021 689 Gene3D BRCT domain 470 575 IPR036420 -
Vivi703g00021 689 Pfam Zinc finger, C3HC4 type (RING finger) 33 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi703g00021 503 616 Core DNA Replication Machinery Family AT4G02110 29.412 5.82e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi703g00021 K10683 - gmx:100784883 867.07