Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi702g00004 ATGGAGTCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAGAATCATCACCAGCAGCAACAAATGAATTCAGGGTTGACACGGTTTAAATCTGCACCAAGTTCATATTTTTCGAATATAATTGATAAAGAGTTCTATGAGCATCTTTTTAACCGACCTTCCAGTCCTGAAACCGAGCGAGTTTTCGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTAGTGGCGGTGGTGGTGGTGGTGATGCTGAAAGTGCTTCTGCTACAGCTTCTGTAGCTGTAGGTGTAGCTGTAGCTGCTGGAGATGATTCATTGACTCAGAATCTAGTGTCAACTGTTCAACAAGAGCTTCTTCCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAACTATGATGGCATCAAGGAATAATGAAACTTTAGATCTTCAACAGCTTCAACGACAACAAAGTAATATGAATAATTATGGTTCCTCTGGCCCTCAGAAGTTTTACCAAAGTTCGGGAAGACCGCCTTTGCCGAATCAAATGAAGACTGGTAGAGGAAGTTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAACCGGTTTTGCTGTTATGAGAGGGATTGGAACGATCGGAGCTGCTAACAGCACTAGCAAAGAAGCGAATTTTTCTTCTTCAGCGGTGCGGTTAAAGAGTGCTCCAGACTACTCATCGGTGTTAGGAGGTGAAATCGGGAATAGTAGCAATCCACAAAATAATCTAGAGTCTGAAGGTTTTGCTGAAACCCGGGGTGACGATTTCATCCCGGGTTTCCCTTTAGGTTCTACATGGGAGGATACCGCAATGATATCCGATAATATTACCGGTCTGAAAAGATACAGAGACGATGACGATGTAAAACCGTTTTCTGCAGGTTTAAATGCGGCTGAAACTAAGGTAAATGAAACAGGAGGCCATACTCCTGCTGCTCCTTTGGCTCATCAGACGAGTTTGCCTAATACCACGGCGGAATTAGCAGCCATTGAAAAGTTTTTACAATTCTCCGATTCTGTTCCGTGCAAAATCCGCGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATCAGCGAGCGAATGCGGAAACTACAAGATCTGGTGCCAAACATGGATAAGCAAACAAACACTTCAGATATGTTGGACTTAGCTGTTGAGTACATTAAAGACCTACAAAAGCAAGTTGAGACTCTTTCAGAAAATAGAGCTAAGTGCACGTGCTCACATCACCAATAA 1314 0.4269 MESDLQQHPTMFLDHQNHHQQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGGGGGGDAESASATASVAVGVAVAAGDDSLTQNLVSTVQQELLPIVKEEIDQQSQTMMASRNNETLDLQQLQRQQSNMNNYGSSGPQKFYQSSGRPPLPNQMKTGRGSCSNLIRHGSSPAGLFSNINIETGFAVMRGIGTIGAANSTSKEANFSSSAVRLKSAPDYSSVLGGEIGNSSNPQNNLESEGFAETRGDDFIPGFPLGSTWEDTAMISDNITGLKRYRDDDDVKPFSAGLNAAETKVNETGGHTPAAPLAHQTSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVETLSENRAKCTCSHHQ 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi702g00004 437 FunFam Transcription factor bHLH130 family 368 436 - -
Vivi702g00004 437 SMART finulus 373 423 IPR011598 GO:0046983
Vivi702g00004 437 Gene3D - 368 436 IPR036638 GO:0046983
Vivi702g00004 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 431 IPR036638 GO:0046983
Vivi702g00004 437 Coils Coil 407 434 - -
Vivi702g00004 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Vivi702g00004 437 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 66 431 - -
Vivi702g00004 437 Pfam Helix-loop-helix DNA-binding domain 372 418 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi702g00004 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.724 7.23e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi702g00004 HLH 8.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi702g00004 - - gmx:100803833 534.258