Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05859 ATGGACTCAGTGTTGGTGCCGCCATGGCTTGAGCCATTGCTGAAAACACCGTTTTTCAATATGTGCCGGATTCACGCCGATGCGGCCAGGAATGAGTGTAACATGTATTGTTTAGACTGCAACAATGGCGACGGCGCCTTCTGCTTTTATTGCCGTTCTTCACGGCACAAAGATCATCCGGTCATTCAGATAAGAAGATCATCTTATCACGATGTAGTGAGGGTGTCAGAGATTCAGAAAGTGTTGGACATAAGTGGAGTACAAACATATGTGATAAACAGTGCCAGAGTTTTGTTCTTGAATGTGAGGCCTCAACCGAAATCTGGGAAAGGAGTAGCTCACATTTGTGAGATTTGTGGAAGGAGTCTCTTGGATTCATTTAGGTTCTGTTCTTTGGGATGTAAGCTTGAAAGAATAAAGAAAAATGGAGATGCAAGCTTTGCCATGGAGGGGGGTAAGAATGAAGCAATGAGAATGGAGGGGGTATCAAGTAGTAGATCAGAAGAAGAATTGCGTGAAGGCTCAACACAAGATATGTATCCAGTCACGCCTCCTCCACCTCCTTTAAATGCAAGAAGAAGAAAAGGTATTCCTCATAGGGCACCTTTTGGTTCTTCTTCATTCTAA 627 0.437 MDSVLVPPWLEPLLKTPFFNMCRIHADAARNECNMYCLDCNNGDGAFCFYCRSSRHKDHPVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDSFRFCSLGCKLERIKKNGDASFAMEGGKNEAMRMEGVSSSRSEEELREGSTQDMYPVTPPPPPLNARRRKGIPHRAPFGSSSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05859 208 SUPERFAMILY B-box zinc-binding domain 19 66 - -
Vivi6g05859 208 MobiDBLite consensus disorder prediction 156 208 - -
Vivi6g05859 208 CDD Bbox2 21 64 - -
Vivi6g05859 208 Pfam PLATZ transcription factor 65 136 IPR006734 -
Vivi6g05859 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05859 Vivi-Chr6 166307308 166310342 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vivi6g05859 PLATZ 8.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05859 - - psat:127125735 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05859 6 166307308 166310342 Vivi6g05859 6 166307308 166310342 ECH
Vivi6g05859 6 166307308 166310342 Vivi1g07110 1 172425118 172426880 PCT