Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05853 ATGGCGGTTTCTCCGTCCGTCGCCACCACTCCAGCTTCTCTTTACGTCGGCGATCTTCATCCCGATGTCTCCGACGCTCAGCTTCGTGAAGCGTTCTCCGATTTCAGTTCTCTCGCTTCCGTTCGCATTTGCAGAGACTCTTCCACCGGAAAATCACTCTGTTATGGCTACGTCAACTTCCTCTCTCTTCAAGACGCAAATCGTGCGATTGAGGTGAAGAATCATTCTATCTTGAGTGGAAAAGCGATAAGAGTCATGTGGTCACGTCGTGATCCTGATGCAAGGAAAAGTAGCATAGGGAACGTGTTTGTTAAGAATTTAGCTGAATCAATAGGTAATTCTGGACTAGAAGAGATGTTTAAAAAGTATGGGAATATTTTGTCGAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACGGAGGAATCTGCAAATACTGCTATTGAGAAGTTGAATGGCTCTACTGTTGATAATAAGCAAATATATGTTGGGAAGTTTGTCAAGAAAAGTGACCGCGTAATGTCTGGCCCTGATGCTAGATATACAAACCTGTACATGAAGAATTTGGACTTGGATATTACAGAAACACTTTTGCAGGAGAAGTTTTCCTCTTTTGGGAAAATCATTAGCTTGGCTGTTGCAAAAAACAGCAATGGGATGTCAAAGGGTTTTGGCTTTGTGAACTTCGATAAACCAGATGATGCTAAAAGGGCAATGGAAGCAATGAATGGACTGCAACTTGGTTCAAAGATTCTGTATGTATCCAGGGCACAGAAGAAGGCTGAGCGTGAGCAGATCTTGAATCAGCAATTCGAAGAGAAACGAAAGGAGCAAGTCTTGAAATATAAGGGCTCAAACATTTATGTGAAGAATATCGATGACACTGTAAGTGATGAAGGACTGCGGGATCATTTTTGTGCATGCGGCACTATAACTTCTGCAAAAGTTATGCGAGATGACAGAGGGATAAGCAAAGGATTTGGTTTTGTGTGTTTTTCCACTCCTGAGGAAGCGAATAAAGCTGTGAACACTTTTCATGGATTCATGTTCCATGGTAAACCACTATACGTGGCTCTTGCTCAGAAGAAAGAGGTCAGACAAGCTCAATTGCAGCTTCAGTACGCACAGCAAATTGCAGGACTAGCTGGGCCATCAACTGCAATTGTCCCTGGGGGATATCCTCCTTTCTACTACACAGCTACTGGTGTTGTTCCACATGCTCCTCCTCGGGCCGGGCTAATGTATCAGCCTATGTCATTGAGGCCAGGGTTGAGGGCTAATGGCTCTGCACCTCCTGCTAGGTCATTCCAACAGTCACCTGCACCTGTTGTTTCTAACAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGTATCTCAGGGAAAGACTCACTCTGGTACATTTATGCCACAAACCCAGCAGACTTCTCAGTCTGTGATATCTTCAAGAGACTCAAGTACTCAGCAGAAAACCAGACAGGCGAAGTATGTACCTAGTGGACGCCCCCATGAGATGGAAAAAGGATCTGGATTCTCATCTGGTGGTTCAAACTCTGGTAGAGGCTTACAAGTATCAGAAATGCTGCATCTCATGGTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTTGGTGAGCATCTATACATGCTTGTCCAGAAAATCAAGCCTAACTTGGCAGCAAAGATTACTGGCATGCTATTGGAGATGGATAGTGATAAACTGATGGCTCTAATGGAATCACCAGAGTCTCTTTCTGCTAAGGTGGAAGAAGCTTTCCAGCTGCTGAAGAACTCTAAAGCTAAAGTTTCTGGACAGGATGTACTTCATTCGAATTTCCTTACATCTGAGGTTGCAGTGAACTGA 1908 0.4413 MAVSPSVATTPASLYVGDLHPDVSDAQLREAFSDFSSLASVRICRDSSTGKSLCYGYVNFLSLQDANRAIEVKNHSILSGKAIRVMWSRRDPDARKSSIGNVFVKNLAESIGNSGLEEMFKKYGNILSSKVVMSEDGKSKGYGFVQFETEESANTAIEKLNGSTVDNKQIYVGKFVKKSDRVMSGPDARYTNLYMKNLDLDITETLLQEKFSSFGKIISLAVAKNSNGMSKGFGFVNFDKPDDAKRAMEAMNGLQLGSKILYVSRAQKKAEREQILNQQFEEKRKEQVLKYKGSNIYVKNIDDTVSDEGLRDHFCACGTITSAKVMRDDRGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQKKEVRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVPHAPPRAGLMYQPMSLRPGLRANGSAPPARSFQQSPAPVVSNNTRQHRQNRGRMNGHAVSQGKTHSGTFMPQTQQTSQSVISSRDSSTQQKTRQAKYVPSGRPHEMEKGSGFSSGGSNSGRGLQVSEMLHLMVANATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDSDKLMALMESPESLSAKVEEAFQLLKNSKAKVSGQDVLHSNFLTSEVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05853 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Vivi6g05853 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Vivi6g05853 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Vivi6g05853 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Vivi6g05853 635 MobiDBLite consensus disorder prediction 433 534 - -
Vivi6g05853 635 FunFam Polyadenylate-binding protein 277 385 - -
Vivi6g05853 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Vivi6g05853 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Vivi6g05853 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Vivi6g05853 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Vivi6g05853 635 CDD RRM2_I_PABPs 99 174 IPR045305 -
Vivi6g05853 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Vivi6g05853 635 SUPERFAMILY PABC (PABP) domain 542 622 IPR036053 GO:0003723
Vivi6g05853 635 FunFam Polyadenylate-binding protein 182 276 - -
Vivi6g05853 635 Coils Coil 263 283 - -
Vivi6g05853 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Vivi6g05853 635 SMART poly_2 550 613 IPR002004 GO:0003723
Vivi6g05853 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Vivi6g05853 635 CDD RRM4_I_PABPs 293 371 - -
Vivi6g05853 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Vivi6g05853 635 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Vivi6g05853 635 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Vivi6g05853 635 MobiDBLite consensus disorder prediction 440 509 - -
Vivi6g05853 635 Gene3D - 537 629 - -
Vivi6g05853 635 PANTHER OS02G0815200 PROTEIN 281 447 - -
Vivi6g05853 635 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
Vivi6g05853 635 FunFam Polyadenylate-binding protein 101 181 - -
Vivi6g05853 635 Gene3D - 182 276 IPR012677 -
Vivi6g05853 635 Gene3D - 277 382 IPR012677 -
Vivi6g05853 635 FunFam Polyadenylate-binding protein 4 99 - -
Vivi6g05853 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Vivi6g05853 635 Gene3D - 2 99 IPR012677 -
Vivi6g05853 635 Gene3D - 100 181 IPR012677 -
Vivi6g05853 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Vivi6g05853 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Vivi6g05853 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Vivi6g05853 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05853 Vivi-Chr6 166227791 166232662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05853 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 52.396 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05853 K13126 - gmx:100804671 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05853 6 166227791 166232662 Vivi6g05853 6 166227791 166232662 ECH
Vivi6g05853 6 166227791 166232662 Vivi1g07115 1 172500262 172503409 PCT