Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05837 ATGGTTCTCAAGACTGAACTCTGCCGATTCAGTGGCGCAAAGATCTACCCAGGAAGAGGCATCAGATTTATTCGTAGTGATTCACAGGTTTTTCTATTTGTGAACTCGAAATGTAAGAGGTATTTCCACAACCGTTTGAAGCCTTCAAAGCTCACATGGACTGCCATGTACAGAAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGACGCCGTGCTACCAAGAAGCCATACTCTAGGTCCATTGTTGGTGCTACACTGGAAGTCATTCAGAAGAAAAGAGCTGAGAAGCCTGAAGTTCGAGATGCGGCCAGGGAAGCTGCTCTGCGTGAAATTAAAGAGAGGATTAAGAAAACAAAGGATGAGAAGAAAGCCAAGAAAGCAGAAGTTGCATCTAAAGCACAAAAATCAGGCAAAGGCAATGTTCAGAAAGGTGGTTTGCCCAAGGGTCCCAAATTGGGCGGCGGTGGCGGTAAACGCTGA 492 0.4593 MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSGKGNVQKGGLPKGPKLGGGGGKR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05837 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Vivi6g05837 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Vivi6g05837 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Vivi6g05837 163 Gene3D - 69 140 - -
Vivi6g05837 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Vivi6g05837 163 Coils Coil 112 139 - -
Vivi6g05837 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Vivi6g05837 163 PANTHER 60S RIBOSOMAL PROTEIN L24 4 148 IPR000988 -
Vivi6g05837 163 SMART 4TRASH 8 46 IPR011017 -
Vivi6g05837 163 MobiDBLite consensus disorder prediction 118 136 - -
Vivi6g05837 163 MobiDBLite consensus disorder prediction 118 163 - -
Vivi6g05837 163 FunFam 60S ribosomal protein L24 3 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05837 Vivi-Chr6 166031306 166032885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05837 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 87.898 4.24e-88 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05837 K02896 - twl:120012240 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05837 6 166031306 166032885 Vivi6g05837 6 166031306 166032885 ECH
Vivi6g05837 6 166031306 166032885 Vivi1g07134 1 173131286 173132667 PCT