Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05833 ATGGATTGGAATACTGATAGCACAGTACCCTTTGTTCCTCCTCCAGGTTCTTCTTTAAGCTTCTTCTACAACTATAACAACTACAATTATTCAGGAATTGAAGCAAGTGAAGGTGCATTAGGTGAGACTCAACAAAGGTTGCTTCCTGTAATTGAGGATGATCCAAACAAGATTAATAGCGGAAAAGATCAGCGAGAGAAGAAGAAGACGAAGAACAAGAAGAATAAATTAACAAGTAACCAAGTAGATGCATTGGAGAGGAGTTTTCATGAAGAAATAAAATTAGACCCTGAAAGAAAGATGAAACTTTCTGCTGAGTTAGGGCTTCAACCTCGTCAAGTTGCTGTCTGGTTTCAAAACAGGCGTACTAGGTGGAAGACTAAGCAGCTTGAACACTCCTATGACGTGCTTAAACAAGAAAATCAGAAACTTCAAGATGAGGTTATGGAGTTGAAGGAAAAGCTAAAAGGGAAATCTGATTTCAGGACACAAACATTTGGCGATGAAACAGTAGAAAGTCCAGGGTTGGGATGGAGAGAGATTGAAGGATATGAGCCATATCCTAGTTCCTACAATCAACAAGGATCAACAAGTAGCACTCAACAAGCTGCAGAAGGATACATCAACAGTTCTTTCATTGTTGAAGATTTTGACTCAGTTTCATTGCATCAGGAATGTCACTGGCCTGAGTTACCTTATTATCCATGA 708 0.3927 MDWNTDSTVPFVPPPGSSLSFFYNYNNYNYSGIEASEGALGETQQRLLPVIEDDPNKINSGKDQREKKKTKNKKNKLTSNQVDALERSFHEEIKLDPERKMKLSAELGLQPRQVAVWFQNRRTRWKTKQLEHSYDVLKQENQKLQDEVMELKEKLKGKSDFRTQTFGDETVESPGLGWREIEGYEPYPSSYNQQGSTSSTQQAAEGYINSSFIVEDFDSVSLHQECHWPELPYYP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05833 235 SUPERFAMILY Homeodomain-like 63 130 IPR009057 -
Vivi6g05833 235 MobiDBLite consensus disorder prediction 165 203 - -
Vivi6g05833 235 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Vivi6g05833 235 Coils Coil 127 161 - -
Vivi6g05833 235 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Vivi6g05833 235 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Vivi6g05833 235 FunFam homeobox-leucine zipper protein ATHB-6-like 76 122 - -
Vivi6g05833 235 CDD homeodomain 77 129 IPR001356 GO:0003677
Vivi6g05833 235 Pfam Homeodomain 71 126 IPR001356 GO:0003677
Vivi6g05833 235 Gene3D - 41 129 - -
Vivi6g05833 235 MobiDBLite consensus disorder prediction 52 76 - -
Vivi6g05833 235 SMART HOX_1 70 132 IPR001356 GO:0003677
Vivi6g05833 235 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Vivi6g05833 235 CDD bZIP 121 156 - -
Vivi6g05833 235 MobiDBLite consensus disorder prediction 187 203 - -
Vivi6g05833 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 62 155 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05833 Vivi-Chr6 165919242 165920556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05833 1 151 Homeobox Transcription Factor Family AT5G03790 46.341 6.86e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi6g05833 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05833 - - vvo:131613115 290.041