Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05832 ATGGATTGGCATTTTGAGAGAACAGTACCATTTGTTCCTCCTCCAGAGTCTTCTTTAAGCTTCTTATATAACTATAACAACTACACTTATTCAGGAATGGAAGCTAGTGAAGTGGCAGTGGGTGAGACTCAACAAAGGTTGCTTTCTGCGAATGATGATGAAATGAATATGAATAATAATGGAAATGACTACCGAGAGAAGAAGAAGACGAAGAACACGAAGATAAAATTAACAAGTAACCAAGTTGAGTCATTGGAGAAGAGTTTCCAAGAAGAAATAAAGTTAGATCCTGATAGAAAGATGAAGCTTTCTGCGGAGCTAGGGCTTCATCCTCGCCAAATTGCTGTCTGGTTTCAAAATAGGCGTACTAGGTGGAGGACCAAGCAGCTTGAGCATTCCAATGATGTGCTTAAGCAAGAAAATCAGAAGCTCAAAGAAGAGGTGATGGAGTTGAAGGAAAAGCTAAAAGAGAAAGATGATTTCAGGATGCAGACATTTGGTGATGAAGTAGTAGAAAGCCCGTTGGAAGGGTTTGGAGAGTTTGAAGGATATAATCCATATCCAAGTTCCCACAATCAACATGGAACAACAAGTAGCATTCAACAAGCTGCAGAGGGATACATCAAAAGTTCTTTCATTGTTGAAGATTTTGACTCAGTTTCATTGCATCAGGAATGCTACTGGCCTTAG 690 0.3957 MDWHFERTVPFVPPPESSLSFLYNYNNYTYSGMEASEVAVGETQQRLLSANDDEMNMNNNGNDYREKKKTKNTKIKLTSNQVESLEKSFQEEIKLDPDRKMKLSAELGLHPRQIAVWFQNRRTRWRTKQLEHSNDVLKQENQKLKEEVMELKEKLKEKDDFRMQTFGDEVVESPLEGFGEFEGYNPYPSSHNQHGTTSSIQQAAEGYIKSSFIVEDFDSVSLHQECYWP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05832 229 Gene3D - 63 136 - -
Vivi6g05832 229 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Vivi6g05832 229 CDD homeodomain 81 129 IPR001356 GO:0003677
Vivi6g05832 229 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Vivi6g05832 229 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Vivi6g05832 229 SUPERFAMILY Homeodomain-like 57 130 IPR009057 -
Vivi6g05832 229 Coils Coil 127 161 - -
Vivi6g05832 229 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Vivi6g05832 229 Pfam Homeodomain 73 126 IPR001356 GO:0003677
Vivi6g05832 229 CDD bZIP 121 156 - -
Vivi6g05832 229 SMART HOX_1 70 132 IPR001356 GO:0003677
Vivi6g05832 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 54 156 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05832 Vivi-Chr6 165844482 165846193 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05832 9 159 Homeobox Transcription Factor Family AT5G03790 47.619 9.38e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi6g05832 Homeodomain 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05832 - - vvo:131613115 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05832 6 165844482 165846193 Vivi1g07137 1 173296208 173297663 PCT