Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05830 ATGGATTGGAATATTGAGAGGACAGTACCCTTTGTTCCTCCTCCAGAGTCTTCTTTAAGCTTCTTATACAACTATAACAACTACACCTATTCAGGAATGGAAGTGAGTGAAGCGGCATTGGGTGAGACCCAACAAAGGTTGCTTCATGTGATTAATAATGGAAATGACTGCGGAGAGAAGAAGAAGACGAAGAACAAGAAGATAAAATTAACAAGTAACCAAGTTGAATCATTGGAGAAGAATTTTCAAGAAGAAATAAAGTTAGATCCTGAAAGAAAGATGAAGCTTTCTGCTGAGTTAGGGCTTCATCCTCGCCAAATTGCTGTCTGGTTTCAAAACAGGCGTACTAGGTGGAAGACTAAGCAGCTTCAACATTCCAATGATGTGCTTAAACACTCGTGTGACGCGCTTAAGCAAGAAAATCAGAAGCTTAAAGAAGAGGTGATGGAGTTGAAGGAAAAGCTAAAAGAGAAAGATGATTTCAGGAGACAAACATTTGGTGAAGAAACAGTAGAAAGCCCATTAGAAGGATTGAGATGGAGAGAGATTGTAGGAGATGATCCATATCCATGCTCCAACAATCAACCAGGAACAGAAAGCAGCATTCAACAATGTGCAGAGGGATATGATTACAGTTCATTCATTGTTGAAGATTTTGACTCAGTTTCACTGCTTCATAACTGGCCTTAG 690 0.3957 MDWNIERTVPFVPPPESSLSFLYNYNNYTYSGMEVSEAALGETQQRLLHVINNGNDCGEKKKTKNKKIKLTSNQVESLEKNFQEEIKLDPERKMKLSAELGLHPRQIAVWFQNRRTRWKTKQLQHSNDVLKHSCDALKQENQKLKEEVMELKEKLKEKDDFRRQTFGEETVESPLEGLRWREIVGDDPYPCSNNQPGTESSIQQCAEGYDYSSFIVEDFDSVSLLHNWP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05830 229 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Vivi6g05830 229 CDD homeodomain 70 122 IPR001356 GO:0003677
Vivi6g05830 229 Coils Coil 61 81 - -
Vivi6g05830 229 FunFam homeobox-leucine zipper protein ATHB-6-like 69 115 - -
Vivi6g05830 229 SMART HOX_1 63 125 IPR001356 GO:0003677
Vivi6g05830 229 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Vivi6g05830 229 Coils Coil 127 164 - -
Vivi6g05830 229 Gene3D - 56 129 - -
Vivi6g05830 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 162 IPR045224 GO:0003700
Vivi6g05830 229 Pfam Homeobox associated leucine zipper 122 155 IPR003106 GO:0006355|GO:0043565
Vivi6g05830 229 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Vivi6g05830 229 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Vivi6g05830 229 SUPERFAMILY Homeodomain-like 51 123 IPR009057 -
Vivi6g05830 229 Pfam Homeodomain 65 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05830 Vivi-Chr6 165738069 165739222 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05830 1 159 Homeobox Transcription Factor Family AT5G03790 43.258 3.05e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi6g05830 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05830 - - vvo:131613115 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05830 6 165738069 165739222 Vivi6g05830 6 165738069 165739222 ECH
Vivi1g07137 1 173296208 173297663 Vivi6g05830 6 165738069 165739222 PCT