Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05828 ATGGAAATTGAAAGGAAGGAAGAACACAGCTACGGAAAACCTAAAATGGATTGGAATACTGTGAGCACAACACCATTTGTTCCTCATCTAGACTCTTCTTTAAGCTTTTTATACAACTATAACACCAACCCTTATTCAGGTATGGAAGTGAGTGAAATGGCATTGAGTGAGACACAACAAAGGTTGCTTCATGTGACGGAAGATGAAATGAACATGATTTATAATGGAAATGGTTACGGAGAGAAAAAGAAGAAGAAATTGACAAGTAACCAGATTGATTTTCTGGAGAGGTGTTTTCAAGAAGATATGAAGTTAGACTCTAAAAGGAAAATGAAACTTTCAAGAGAGTTAGGGCTTCAACCTCGCCAAATTACTGTTTGGTTTCAAAATAGGCGTACTAGGTTGAAGACTAAGCAACTTGAACGCTCGTATGATGAGCTTAAGCAAGAAAATCAGAAACTTCAGAAAGAGGTTATGGATTTGAAGGAAAAACTAAAAGAGAAAGCTCATTTTAGGACACAGACATATGGTGAAGAAACAATAGAAAACCTAGAAGGGCTGCCATGCAGAAATATAGAAGGAGAGCCATATCCATGTTTCAATATGACACAAGCAACAACAAGTAGCATTCAACAAGCTGCAGAGGGATATGACCACAGTTCCTTTAATGTTGCAGATTTTGACTCAGTTTCATTGTTTCATGAGTGTCACTGGCCTAATTTACCTTATTATCCCTAA 738 0.3713 MEIERKEEHSYGKPKMDWNTVSTTPFVPHLDSSLSFLYNYNTNPYSGMEVSEMALSETQQRLLHVTEDEMNMIYNGNGYGEKKKKKLTSNQIDFLERCFQEDMKLDSKRKMKLSRELGLQPRQITVWFQNRRTRLKTKQLERSYDELKQENQKLQKEVMDLKEKLKEKAHFRTQTYGEETIENLEGLPCRNIEGEPYPCFNMTQATTSSIQQAAEGYDHSSFNVADFDSVSLFHECHWPNLPYYP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05828 245 CDD homeodomain 82 139 IPR001356 GO:0003677
Vivi6g05828 245 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Vivi6g05828 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 74 167 IPR045224 GO:0003700
Vivi6g05828 245 SUPERFAMILY Homeodomain-like 70 140 IPR009057 -
Vivi6g05828 245 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Vivi6g05828 245 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
Vivi6g05828 245 Pfam Homeodomain 82 136 IPR001356 GO:0003677
Vivi6g05828 245 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Vivi6g05828 245 CDD bZIP 131 166 - -
Vivi6g05828 245 Gene3D - 78 148 - -
Vivi6g05828 245 SMART HOX_1 80 142 IPR001356 GO:0003677
Vivi6g05828 245 Coils Coil 130 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05828 Vivi-Chr6 165708578 165709925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05828 16 157 Homeobox Transcription Factor Family AT5G03790 47.403 2.21e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vivi6g05828 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05828 - - vvo:131613115 498.819