Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05818 ATGGAATCCAATGGAATTTTTCCTACTATAAACAATGGATTTATAGGTGTAGAAAACCCTTCAAAACAACAACAAAATTCTCATTCTCACACTTTGCATCATCATCATCACCAAATGGTTTCATATGATCAACCTCATCAATCAATAAAACAAACATACCCTTCTTACTCATCAAAAACCATCAATAATAACAACAACAACAACAACAAACAAGTCAACCTCAGTGATGAAGACGAGCCGTGTTTCGGAGCAGATGAAGCCTCTGGTGGTGACCCAAAGAGAAAAGGATCACCATGGCATAGAATGAAATGGACAGACACAATGGTAAGGCTCTTAATAATGGCTGTTTATTACATCGGTGACGAAGCGGGTACTTCGGAGATAGGTGCTGATATTAAAAAGAAAGTGAGTGGCTTGTTACAGAAGAAAGGTAAATGGAAATCGGTTTCTAAAGGGATGATGGAGAAGGGATACTATGTTTCGCCACAACAATGTGAAGACAAGTTCAATGATTTGAACAAAAGGTACAAGAGGGTTAATGATATTGTCGGAAAAGGAACAGCTTGTAGGGTTGTTGAGAATCAAAGCTTGTTGGATAGTATGGATTTGTCGGCGAAACTTAAAGACGAAGCGAGGAAGCTTTTGAATTCTAAGCACCTTTTCTTTAGAGAAATGTGTGCTTATCATAATAGTTGTGGCCATGGGAATAATACTTTGCAGCAGCAGCAACAGTCTTCGAATGAGAATCAGCCACAACAACAGCAGCAGCAGCAGCAACAGCAGCAACAACAGCAACCTCAGCAGCAGCAGGAGCAACAATGTTTGCATTCGTCGAACGGAATAGGAATGTTGAAACTGAAAGGAAAAAGCGGAGGAGGAGAAGAGGACGAGGATGAAGACGAAGAGGATGAATGGGAGGAGGATTCTGAAGAGGAGGAAGAAGAATCAGGTGAAGATGAGAATAATGATCATTTGAGGAAGAAAACAAGGAAGGTTTCGGCTTCGGCTTCGTCAACTGCGATGATGCAACAGCTGAGTAGTGAAGTGACAAATGTGTTGCAAGATGGAGTGAAGAGTTGTTGGGAGAAGAAGCAGTGGATGAAGAAGAGGGTTGTGCAGTTGGGAGAAGAACAGATGAACTATCATGTTGAAGGATTTGAGATTGAGAAACAAAGGTTGAAATGGGAGAGGTTTAGTAGTAACAAAGAGAGGGAAATGGAGAGACAGAAGCTTGAGAATGAAAGGAAGTGTTTGGAGATTGATAGAATGGTTTTGTTGCTTCGGCAGAAGGAGGTTGAGTTGGAGAATACTCAGCAGATGCAGCAACAGCAGCATTCTTCTACTTAG 1347 0.412 MESNGIFPTINNGFIGVENPSKQQQNSHSHTLHHHHHQMVSYDQPHQSIKQTYPSYSSKTINNNNNNNNKQVNLSDEDEPCFGADEASGGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGTSEIGADIKKKVSGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDIVGKGTACRVVENQSLLDSMDLSAKLKDEARKLLNSKHLFFREMCAYHNSCGHGNNTLQQQQQSSNENQPQQQQQQQQQQQQQQPQQQQEQQCLHSSNGIGMLKLKGKSGGGEEDEDEDEEDEWEEDSEEEEEESGEDENNDHLRKKTRKVSASASSTAMMQQLSSEVTNVLQDGVKSCWEKKQWMKKRVVQLGEEQMNYHVEGFEIEKQRLKWERFSSNKEREMERQKLENERKCLEIDRMVLLLRQKEVELENTQQMQQQQHSST 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05818 448 PANTHER F16F4.11 PROTEIN-RELATED 8 438 - -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 237 339 - -
Vivi6g05818 448 Pfam Myb/SANT-like DNA-binding domain 101 227 IPR044822 -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 294 319 - -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 1 27 - -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 42 75 - -
Vivi6g05818 448 Coils Coil 295 322 - -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 237 279 - -
Vivi6g05818 448 MobiDBLite consensus disorder prediction 1 98 - -
Vivi6g05818 448 Coils Coil 401 428 - -
Vivi6g05818 448 Gene3D - 104 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05818 Vivi-Chr6 165514115 165515810 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi6g05818 Myb_DNA-bind_4 7.1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05818 - - gmx:547619 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05818 6 165514115 165515810 Vivi6g05818 6 165514115 165515810 ECH
Vivi6g05818 6 165514115 165515810 Vivi1g07141 1 173394041 173396079 PCT