Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05806 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGGAAATCACTCAAGGTTGTTCCAGAAGAAAGCAGGATTATCCATCTTTCATCGGCATGTCTAGGGGAGGTCAGTAAGGATAAAGGGAATGAACCAGTATCCCTCTATGTGAAGTTTGATGATAAGAAGGTTCAACTTGGAACACTTTCTTCAGAAAAATTTCCACAGACATCTTATGATTTGGTGTTCGAGAAGGATTTTGAGCTATCCCATAACTGGAAATACGGAAGTGTCTTCTTTACTGGATATAAATTTGCATCTGAGAACGTGTCTGATGATGAGGATGAAGATTCTGATGGGAAACCTGAGTTTGAGGTGAAGAGTGGTGCCAAATCCCTTGTTAATGGAGCTAAACCAAAGAAAACATCAGATGAAGACGAATCATCTGAATCTGACTCTGACTCCGATGATGATTCTGGTGAAGAGAAGCCCACGACCAATGGACATATTGGAATTAGTGAAGATGATGATGACAGCGATGAGGATGATGATGATAGCGATGAGGATGATGATTCTGATGATTCTGATGAGGAGACACTGGCTAAGGCTGAAGGGAGCAGTAAGAGAAATCATGAATCTTCAAAGAAAACTCCTGTACCTGTGAAGAAGGCAAAGTTTGTTGGTACTCCTGAGAAGACTGGTGGCCATAGTGGTGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTCTAAAATCAGCTGCAAATAACAAGCAGCAGACACCAAAGTCAAATGGGGATTACAGCTGCAAACCTTGTAACAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCCAAGTGA 855 0.4222 MEFWGVEVKSGKSLKVVPEESRIIHLSSACLGEVSKDKGNEPVSLYVKFDDKKVQLGTLSSEKFPQTSYDLVFEKDFELSHNWKYGSVFFTGYKFASENVSDDEDEDSDGKPEFEVKSGAKSLVNGAKPKKTSDEDESSESDSDSDDDSGEEKPTTNGHIGISEDDDDSDEDDDDSDEDDDSDDSDEETLAKAEGSSKRNHESSKKTPVPVKKAKFVGTPEKTGGHSGGVHVDTPYPKQALKSAANNKQQTPKSNGDYSCKPCNRSFKTEDALGSHNKAKHSAK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05806 284 MobiDBLite consensus disorder prediction 100 284 - -
Vivi6g05806 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 284 IPR013087 -
Vivi6g05806 284 FunFam Histone deacetylase HDT1 1 99 - -
Vivi6g05806 284 Gene3D Nucleoplasmin core domain 1 100 - -
Vivi6g05806 284 ProSitePatterns Zinc finger C2H2 type domain signature. 260 281 IPR013087 -
Vivi6g05806 284 MobiDBLite consensus disorder prediction 189 209 - -
Vivi6g05806 284 MobiDBLite consensus disorder prediction 240 262 - -
Vivi6g05806 284 MobiDBLite consensus disorder prediction 164 188 - -
Vivi6g05806 284 Pfam C2H2-type zinc finger 258 282 - -
Vivi6g05806 284 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05806 Vivi-Chr6 165322242 165326386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05806 1 283 C2H2 Transcription Factor Family AT5G03740 43.854 2.40e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g05806 NPL 5.1e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05806 - - gmx:100812152 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05806 6 165322242 165326386 Vivi6g05806 6 165322242 165326386 ECH