Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05805 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGGAAATCACTCAAGGTTGTTCCAGAAGAAAGCAGGATTATCCATCTTTCATCGGCATGTCTAGGGGAGGTCAGTAAGGATAAAGGGAATGAACCAGTATCCCTCTATGTGAAGTTTGATGATAAGAAGGTTCAACTTGGAACACTTTCTTCAGAAAAATTTCCACAGACATCTTATGATTTGGTGTTCGAGAAGGATTTTGAGCTATCCCATAACTGGAAATACGGAAGTGTCTTCTTTACTGGATATAAATTTGCATCTGAGAACGTGTCTGATGATGAGGATGAAGATTCTGATGATTTTCAAGAGGGAGCTATTCCAATTATTGCTCCTGCCAATGGGAAACCTGAGTTTGAGGTGAAGAGTGGTGCCAAATCCCTTGTTAATGGAGCTAAACCAAAGAAAACATCAGATGAAGACGAATCATCTGAATCTGACTCTGACTCCGATGATGATTCTGGTGAAGAGAAGCCCACGACCAATGGACATATTGGAATTAGTGAAGATGATGATGACAGCGATGAGGATGATGATGATAGCGATGAGGATGATGATTCTGATGATTCTGATGAGGAGACACTGGCTAAGGCTGAAGGGAGCAGTAAGAGAAATCATGAATCTTCAAAGAAAACTCCTGTACCTGTGAAGAAGGCAAAGTTTGTTGGTACTCCTGAGAAGACTGGTGGCCATAGTGGTGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTCTAAAATCAGCTGCAAATAACAAGCAGCAGACACCAAAGTCAAATGGGGATTACAGCTGCAAACCTTGTAACAGGTCATTTAAGACTGAAGATGCCTTAGGTTCTCATAACAAGGCCAAGCACAGTGCCAAGTGA 897 0.4214 MEFWGVEVKSGKSLKVVPEESRIIHLSSACLGEVSKDKGNEPVSLYVKFDDKKVQLGTLSSEKFPQTSYDLVFEKDFELSHNWKYGSVFFTGYKFASENVSDDEDEDSDDFQEGAIPIIAPANGKPEFEVKSGAKSLVNGAKPKKTSDEDESSESDSDSDDDSGEEKPTTNGHIGISEDDDDSDEDDDDSDEDDDSDDSDEETLAKAEGSSKRNHESSKKTPVPVKKAKFVGTPEKTGGHSGGVHVDTPYPKQALKSAANNKQQTPKSNGDYSCKPCNRSFKTEDALGSHNKAKHSAK 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05805 298 ProSitePatterns Zinc finger C2H2 type domain signature. 274 295 IPR013087 -
Vivi6g05805 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 272 298 IPR013087 -
Vivi6g05805 298 MobiDBLite consensus disorder prediction 118 298 - -
Vivi6g05805 298 Pfam C2H2-type zinc finger 272 296 - -
Vivi6g05805 298 MobiDBLite consensus disorder prediction 203 223 - -
Vivi6g05805 298 FunFam Histone deacetylase HDT1 1 99 - -
Vivi6g05805 298 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Vivi6g05805 298 MobiDBLite consensus disorder prediction 178 202 - -
Vivi6g05805 298 Gene3D Nucleoplasmin core domain 1 100 - -
Vivi6g05805 298 MobiDBLite consensus disorder prediction 254 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05805 Vivi-Chr6 165322242 165326386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05805 1 297 C2H2 Transcription Factor Family AT5G03740 44.373 9.41e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g05805 NPL 5.6e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05805 - - gmx:100812152 334.724