Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05802 ATGGAGTGGCATCAAGTCCAGCGGAAGGAACTCCGAAATCTAGTTACATGGTGGGATTCTTTCCCTTACGGAAGGATTCAGGCGGGGCAGGAGGAGACGATCTCAACGTTTTATTGTTTGGAGTTCCCGGAGAGGTGTCGGGCGGTAGACTTGTTCAAGATTTTTGGTTGTGTGGGAGATGTGGTGGAGGTTGTCATCCCTCCAAGACGTAATAGATTTGGTAAACGCTTCGGGTTCGCGAGGTTCAAAAATGTGGAGGACGAAAAATTTCTAGCGATTAAGTTGGATAATATTTTGATAGATGGAAAGAAAATCCACGTTAATCAACCCAGATATAGCAGGAAGGAAGTAAGAAGGAAGTCAGAGGCATGGCCAAGGGAGGAAGTCTCGAAGAAGCAGAATGTTTTACCTAGGAACAATTTTGTTCAAATGAACAAATCTTTTGCTGATGGTGTTTTGAAGGTGAAGAAGTTTGAGGATAAGGAGATAGCTAGTGGTTTCAGGTTCAACACTAGTGCTGAAGTCAAGAATAAATGGAGGAAGGCATTCATAGGGGAAGTGTTGTTTGCTGGAGAAACATACAATATTCAAACCCATCTTGAAATTGAAGGTTTCTTTTTTATCAAAGTTCACCCACTGGGAGCTAATCTATGCCTTTTAGAGGAATTAGAGGAAGGTGTAATACAGGAACTGATCAATGAAGCATCCTCATTGTGGAAACAATGGTTTAAATCGATAAGACCATGGCAAGAGAAAGACATTGATTCTGAGCGTGTTATGTGGGTCAGAGTTTATGGGATCCCATGTCATGCTTGTTGCTTTGAGTTCTTCGAATCTGTTGCTAACATGTTGGGAACTTACATATGCGTGGATGAGAATACGATGTCGGGAGACAACATGGACATAGCCAGGATATTGATTAGAGTTCCTTCGTCTTTCTCGCTGAAGGATCATGTGGAAGTGAATGTTGATGGTGACGTTTTTCAGTTGGTTTTACATGAAGATACCTATGGCCCAGTTCGTCTAGTTGCTACAAGCCCAACTCCAAGACCTTTTCATAAGAAGTCTTCACTCTCTTCTTCTAACTCCGGAGAAATAGGTTTTTCTTATCACAAAGATTAA 1122 0.418 MEWHQVQRKELRNLVTWWDSFPYGRIQAGQEETISTFYCLEFPERCRAVDLFKIFGCVGDVVEVVIPPRRNRFGKRFGFARFKNVEDEKFLAIKLDNILIDGKKIHVNQPRYSRKEVRRKSEAWPREEVSKKQNVLPRNNFVQMNKSFADGVLKVKKFEDKEIASGFRFNTSAEVKNKWRKAFIGEVLFAGETYNIQTHLEIEGFFFIKVHPLGANLCLLEELEEGVIQELINEASSLWKQWFKSIRPWQEKDIDSERVMWVRVYGIPCHACCFEFFESVANMLGTYICVDENTMSGDNMDIARILIRVPSSFSLKDHVEVNVDGDVFQLVLHEDTYGPVRLVATSPTPRPFHKKSSLSSSNSGEIGFSYHKD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05802 373 MobiDBLite consensus disorder prediction 350 367 - -
Vivi6g05802 373 PANTHER DUF4283 DOMAIN PROTEIN 170 363 - -
Vivi6g05802 373 SUPERFAMILY RNA-binding domain, RBD 34 110 IPR035979 GO:0003676
Vivi6g05802 373 Gene3D - 24 121 IPR012677 -
Vivi6g05802 373 SMART rrm1_1 36 108 IPR000504 GO:0003723
Vivi6g05802 373 MobiDBLite consensus disorder prediction 348 373 - -
Vivi6g05802 373 CDD RRM_SF 42 108 - -
Vivi6g05802 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Vivi6g05802 373 Pfam Domain of unknown function (DUF4283) 208 307 IPR025558 -
Vivi6g05802 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05802 Vivi-Chr6 165229537 165230658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05802 35 127 Eukaryotic Initiation Factors Gene Family AT3G16380 31.250 5.25e-06 46.6