Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05794 ATGGCTGGAACAACTACTACTCATGCATCGTCGTCCTCATCTGGAAAAGTCTCGACCGGCCGTCATCCGGTGTACCGTGGAGTGAGGCGTAGAGGTAACGGAAAATGGGTGTCTGAAATCCGTGAACCGAAAAAACCTAATAGGATTTGGTTAGGGACATTCCCAACGCCTGAGATGGCAGCTATTGCTTATGATGTAGCTGCTCTTGCTCTTAAGGGTAAAAATGCTGAGCTGAATTTCCCTAACTCTTCTTCTTCTTTACCTGTTCCTGCTTCTTCCTCTGCTCGCGATATTCAGACGGCTGCAGCTAGTGCTGCAGCCGCCATAGGCGCAGCAGAGGATGCGCTTGTGAATATTAATGAGGGAAATAATATGAACCATGCAGCAATGGCGGCACCACAGGATTTTTTTTCGGTTGGTGAGAATGAGAATAGTTATAATGTTAATGAATTTATTGATGAGGATATGATCTTTGATATGCCTAATGTTTTGGCTAATATGGCTGAAGGAATGCTACTTAGTCCTCCTCGTTTCGACTATGCGAATAACGGCTACGGCTACGACGATACTCCAGAAAGTTATATGAGTGATGATCAAAACCTTTGGAGTTATCCTTATTTTCCATAA 627 0.4418 MAGTTTTHASSSSSGKVSTGRHPVYRGVRRRGNGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKNAELNFPNSSSSLPVPASSSARDIQTAAASAAAAIGAAEDALVNINEGNNMNHAAMAAPQDFFSVGENENSYNVNEFIDEDMIFDMPNVLANMAEGMLLSPPRFDYANNGYGYDDTPESYMSDDQNLWSYPYFP 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05794 208 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Vivi6g05794 208 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Vivi6g05794 208 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Vivi6g05794 208 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vivi6g05794 208 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
Vivi6g05794 208 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Vivi6g05794 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 204 IPR045277 GO:0003700
Vivi6g05794 208 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vivi6g05794 208 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Vivi6g05794 208 MobiDBLite consensus disorder prediction 1 30 - -
Vivi6g05794 208 MobiDBLite consensus disorder prediction 1 19 - -
Vivi6g05794 208 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05794 Vivi-Chr6 164744190 164745533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05794 14 205 AP2-EREBP Transcription Factor Family AT2G36450 60.622 6.63e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi6g05794 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05794 - - gmx:100799620 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05794 6 164744190 164745533 Vivi6g05794 6 164744190 164745533 ECH
Vivi1g07184 1 175947657 175948379 Vivi6g05794 6 164744190 164745533 PCT