Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05789 ATGCCTCAAAAGTACCTACACCAGCTACTAAAGGAAGATCAAGAGCCCTTCCTTCTCAAAAACTACATTTCCGATAGACGCAACCAACTCAAAATCACTACCATCAATAAAATTCAAAACTCTAACTCTAATGTCAATTTCAACATAAATCTCTGTAAAAACGCTTCTTGTTTTTTCTCATTCCCAGAAACACCAGACTTCAGAAAATCGCCGCTGTTCGAACTAACATCGCCGGTTAAAAGCCCCTGCAAATCGTCACGAACTGCCGCTCTTCTTCTAGAAGCTGCTCTCAGGATCCAGAAACATTCATCATCTTCATCTTCAAATCACAAATCAAAAACCAAAGGTTTTGGCCTGTTTGGATCTTTATTCAAGAGAATTAAGCAAAGAAACCAGAACCGGAAGCGTGAAATCGAGAATGAAAATGTTTCTATCAAAGATATATTGAGTAGTAAAAAATTTGATTCTCAAGAGAGAAACAAAAGTTTGCCGTTCGAAACCGAAACTTCTTGCAGCGGTTACTCTGAAAGGATCATTCATGAAGCTTGTGCTTGTTATCACAGTTCTTTCTCTGAAAGTCCTTTTCGTTTTGTTCTTCAAACGAGTTCTTGCTCCGGCAGCCACACGCCGGAGTTAGCATCGCCGAGTCGTCGCATAACAGAGGACAAGGGGAGTAATGGAGAAGTTGAGAGTATCAATCAATTTCGGTCCGGGGAAGAAGAGGAAGAAGATAAGGAACAGTGTAGTCCAGTCTGTGTTTTAGACCCACCATTCGAGGACGATGAGGAAGGACATATAAACGATGATGACGACGATGATGATGATGGTGGTGGTGGTGGTTTTGATTTGAGCAGCTATGCCAATGTACAGAGAGCAAGGCAGAAGATATTGTACAAGCTTCGGAGATTTGAGAAACTCGCGGGATTGGATCCGTTAGAACTCGAGAAGAGAATGCTGGAAGACGAAGAGGATGAGGAGGAAACATATATGGAAGAGGATGATGATGAAGATGAGGAAAGTGAAGTATCATGTAAAGAAAATGACTTCAAAGAGCTGGTTTTCGAAGCTGTCTATATGTCAATGGTTCATGACAGACAGCAAATGCCACAAGAGTTTAAGAAACTAATTTATGATCTCATTTTGGAAGAAGAGAGGGAATTTAACTCTCTAGAAGATAGGGACATGGTGATAGCTAATATATACAAGAGGATGGAATCTTGGAAAGAAGTGGAGTCAAACACAATTGATATGATGATAGAAGAGGATTTCTCTGTAGAGAATGGAGGGTGGAAGAAAAATGTTGAACAGATAAGGAATATGGCTGGTGAGCTTGAGTTTGATATCTTTAGCATTTTGGTGAAGGAATTTTCAGAGGAATTAGTATGTTAG 1389 0.4017 MPQKYLHQLLKEDQEPFLLKNYISDRRNQLKITTINKIQNSNSNVNFNINLCKNASCFFSFPETPDFRKSPLFELTSPVKSPCKSSRTAALLLEAALRIQKHSSSSSSNHKSKTKGFGLFGSLFKRIKQRNQNRKREIENENVSIKDILSSKKFDSQERNKSLPFETETSCSGYSERIIHEACACYHSSFSESPFRFVLQTSSCSGSHTPELASPSRRITEDKGSNGEVESINQFRSGEEEEEDKEQCSPVCVLDPPFEDDEEGHINDDDDDDDDGGGGGFDLSSYANVQRARQKILYKLRRFEKLAGLDPLELEKRMLEDEEDEEETYMEEDDDEDEESEVSCKENDFKELVFEAVYMSMVHDRQQMPQEFKKLIYDLILEEEREFNSLEDRDMVIANIYKRMESWKEVESNTIDMMIEEDFSVENGGWKKNVEQIRNMAGELEFDIFSILVKEFSEELVC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05789 462 MobiDBLite consensus disorder prediction 234 249 - -
Vivi6g05789 462 MobiDBLite consensus disorder prediction 317 342 - -
Vivi6g05789 462 MobiDBLite consensus disorder prediction 261 278 - -
Vivi6g05789 462 MobiDBLite consensus disorder prediction 206 284 - -
Vivi6g05789 462 PANTHER OS04G0572500 PROTEIN 3 460 - -
Vivi6g05789 462 Coils Coil 312 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05789 Vivi-Chr6 164604907 164608474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05789 3 461 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 34.269 3.15e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05789 - - cam:101499859 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05789 6 164604907 164608474 Vivi6g05789 6 164604907 164608474 ECH
Vivi6g05789 6 164604907 164608474 Vivi1g07185 1 176099837 176103176 PCT