Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05776 ATGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAACAACAACATTCTACAAAGATGCCAAAACTTGCTCTTCAACATGCAGAATCTCATCAACAACAATCTTCTGTTCCTCCTGTAGCCGCACCTGCACTTCCTTTCTTTGTACCTCAACCCAACAACACTAAAGTTACCACCAACTTGTCAGATTCCACATTATCACCTTCTTCCAACAGATCATTTCCTAGAATGGGAAGCCATTTTAGCTTGTCTCAGTGGCAAGAACTTGAGTTACAGGCTTTGATATTCAGGTACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATCAAGAAAAGTCTTCTCCATTCATCTCCTTATTTTCTTCATCACCCTCTTCAACATTATCATCCTACAGCTTTGTTGCAAACGGGGTATTGGGGAAGAGGAGCAATGGATCCAGAACCCGGTCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGCTCGAGGGATGTGGTGGCCGGACAAAAGTACTGTGAAAGACACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAACTAGTGCCGGTGCTGGTGGTACATCTTTCAATGCTTCTTCCACTATTTCTTCACAGCCTCTTGCTAGTTCCTCAATCAAATCTCCTTTCAATATTCTTCACCTCAATGAAAGTTCATCTGGGACCAATAATGAAGAGAAGAGATTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGCAAATGCTAAGGCATTTCTTCGACGATTGGCCGAGATCACTGCAAGAGTCTGACAAAGGTGGGTCATCCTCCACATGTCTTTCAATATCAATGCCAGGAAATAACAACAACAACACTACTTCATCTTCAGATGTGTCATTGAAATTGTCTACTGGCTATGCTGAAGAACCATGTCCTAGAAATGTGAATGTGGGCCTAGAAACTGATCAGCAGCAACAACAAATTCAATTGAATTGGGTTGGAGGATGGAATTCAAGTAATCAAGTGAGTTCATCAATGGGAGGAGGACCACTAGCTGAGGCACTAAGATCATCATCTACTTCAACTTCTTCACCTACTAGTGTTTTACATCAATTGCCACGTTCTTCTGCTGCTTCTGAGACCAGCTACATTAGTACCTAA 1191 0.4324 MDFHLKQWRNQHESEEQQHSTKMPKLALQHAESHQQQSSVPPVAAPALPFFVPQPNNTKVTTNLSDSTLSPSSNRSFPRMGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHHPLQHYHPTALLQTGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAGAGGTSFNASSTISSQPLASSSIKSPFNILHLNESSSGTNNEEKRLFESEDHVGGDGRSGGQMLRHFFDDWPRSLQESDKGGSSSTCLSISMPGNNNNNTTSSSDVSLKLSTGYAEEPCPRNVNVGLETDQQQQQIQLNWVGGWNSSNQVSSSMGGGPLAEALRSSSTSTSSPTSVLHQLPRSSAASETSYIST 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05776 396 Pfam WRC 153 195 IPR014977 -
Vivi6g05776 396 ProSiteProfiles WRC domain profile. 152 196 IPR014977 -
Vivi6g05776 396 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05776 396 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g05776 396 MobiDBLite consensus disorder prediction 183 222 - -
Vivi6g05776 396 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g05776 396 MobiDBLite consensus disorder prediction 201 222 - -
Vivi6g05776 396 PANTHER GROWTH-REGULATING FACTOR 5 47 299 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi6g05776 396 MobiDBLite consensus disorder prediction 279 309 - -
Vivi6g05776 396 Pfam QLQ 83 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05776 396 MobiDBLite consensus disorder prediction 277 309 - -
Vivi6g05776 396 MobiDBLite consensus disorder prediction 350 396 - -
Vivi6g05776 396 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05776 396 MobiDBLite consensus disorder prediction 364 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05776 Vivi-Chr6 164406864 164409260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05776 1 382 GRF Transcription Factor Family AT3G52910 48.985 4.83e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi6g05776 WRC 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05776 - - gmx:100814842 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05776 6 164406864 164409260 Vivi6g05776 6 164406864 164409260 ECH