Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05775 ATGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAACAACAACATTCTACAAAGATGCCAAAACTTGCTCTTCAACATGCAGAATCTCATCAACAACAATCTTCTGTTCCTCCTGTAGCCGCACCTGCACTTCCTTTCTTTGTACCTCAACCCAACAACACTAAAGTTACCACCAACTTGTCAGATTCCACATTATCACCTTCTTCCAACAGATCATTTCCTAGAATGGGAAGCCATTTTAGCTTGTCTCAGTGGCAAGAACTTGAGTTACAGGCTTTGATATTCAGGTACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATCAAGAAAAGTCTTCTCCATTCATCTCCTTATTTTCTTCATCACCCTCTTCAACATTATCATCCTACAGCTTTGTTGCAAACGGGGTATTGGGGAAGAGGAGCAATGGATCCAGAACCCGGTCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGCTCGAGGGATGTGGTGGCCGGACAAAAGTACTGTGAAAGACACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAACTAGTGCCGGTGCTGGTGGTACATCTTTCAATGCTTCTTCCACTATTTCTTCACAGCCTCTTGCTAGTTCCTCAATCAAATCTCCTTTCAATATTCTTCACCTCAATGAAAGTTCATCTGGGACCAATAATGAAGAGAAGAGATTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGCAAATGCTAAGGCATTTCTTCGACGATTGGCCGAGATCACTGCAAGAGTCTGACAAAGATGTGTCATTGAAATTGTCTACTGGCTATGCTGAAGAACCATGTCCTAGAAATGTGAATGTGGGCCTAGAAACTGATCAGCAGCAACAACAAATTCAATTGAATTGGGTTGGAGGATGGAATTCAAGTAATCAAGTGAGTTCATCAATGGGAGGAGGACCACTAGCTGAGGCACTAAGATCATCATCTACTTCAACTTCTTCACCTACTAGTGTTTTACATCAATTGCCACGTTCTTCTGCTGCTTCTGAGACCAGCTACATTAGTACCTAA 1119 0.4343 MDFHLKQWRNQHESEEQQHSTKMPKLALQHAESHQQQSSVPPVAAPALPFFVPQPNNTKVTTNLSDSTLSPSSNRSFPRMGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHHPLQHYHPTALLQTGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAGAGGTSFNASSTISSQPLASSSIKSPFNILHLNESSSGTNNEEKRLFESEDHVGGDGRSGGQMLRHFFDDWPRSLQESDKDVSLKLSTGYAEEPCPRNVNVGLETDQQQQQIQLNWVGGWNSSNQVSSSMGGGPLAEALRSSSTSTSSPTSVLHQLPRSSAASETSYIST 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05775 372 ProSiteProfiles WRC domain profile. 152 196 IPR014977 -
Vivi6g05775 372 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05775 372 Pfam WRC 153 195 IPR014977 -
Vivi6g05775 372 MobiDBLite consensus disorder prediction 1 20 - -
Vivi6g05775 372 MobiDBLite consensus disorder prediction 184 215 - -
Vivi6g05775 372 Pfam QLQ 83 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05775 372 MobiDBLite consensus disorder prediction 201 215 - -
Vivi6g05775 372 MobiDBLite consensus disorder prediction 1 39 - -
Vivi6g05775 372 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi6g05775 372 MobiDBLite consensus disorder prediction 340 372 - -
Vivi6g05775 372 PANTHER GROWTH-REGULATING FACTOR 5 47 324 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi6g05775 372 MobiDBLite consensus disorder prediction 327 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05775 Vivi-Chr6 164406864 164409262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05775 1 358 GRF Transcription Factor Family AT3G52910 45.501 1.62e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi6g05775 WRC 2.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05775 - - gmx:100814842 511.916