Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05746 ATGGTTTGCAAAAAAATAGAGTTGGCACATCTTAGTGAAAGGAGTGCCATATTTTCTAAAAGAAAGAAGGATCTTTTCGACAAAGCATGTGAGTTATCTGTTTTTTATGGTGCTAGAGTGGCTGTGCTTGGATTCTCCCCTGCTGGTGACCCATTTGCTTTTGGTTCTCCATCTGTTGATGCTGTAGTTGATGAGTATCTTCACAAAGGTCAAGAATTTGACAGTGAATTATCAAGAAAAAATCTTGAATCTTCTGAAAATGGAAAACTCATCAAACTCAATAAACAAATTAAGCGTGCGATCAAAGAGCTGAAGATGGAAGAAAAAAAGATGGAAAAAATGGACAAAGGTAATGTTACCTTTATTCCTGATGATCTTGGTGCGGAGGAACTTCTTAAAGTGATGGCTTTTTTGAAAAAGCTCCGGGATGAGATTGAGGTGGCAAAATCTTTACTTCTTATTGCAAAGAAACCTATATGA 480 0.3667 MVCKKIELAHLSERSAIFSKRKKDLFDKACELSVFYGARVAVLGFSPAGDPFAFGSPSVDAVVDEYLHKGQEFDSELSRKNLESSENGKLIKLNKQIKRAIKELKMEEKKMEKMDKGNVTFIPDDLGAEELLKVMAFLKKLRDEIEVAKSLLLIAKKPI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05746 159 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
Vivi6g05746 159 SUPERFAMILY SRF-like 12 69 IPR036879 GO:0003677|GO:0046983
Vivi6g05746 159 Coils Coil 87 117 - -
Vivi6g05746 159 Gene3D - 11 81 IPR036879 GO:0003677|GO:0046983
Vivi6g05746 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 54 IPR002100 GO:0003677|GO:0046983
Vivi6g05746 159 ProSiteProfiles MADS-box domain profile. 12 58 IPR002100 GO:0003677|GO:0046983
Vivi6g05746 159 PANTHER MADS BOX PROTEIN 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05746 Vivi-Chr6 163937909 163938388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05746 12 119 Type I MADS-box Gene Family AT2G24840 37.288 5.05e-17 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi6g05746 SRF-TF 4.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05746 - - vvo:131615225 295.819