Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05718 ATGCATACAATGCCTGGGACAGGACAGAAAGAAGGAACAGCCCAAAATTCAGAGTCAACAGGGGGAAACGGGGATCCGGAAAAACCCACAGATTCTGGTGAGCAGATAGACCTTGATGGGGATAATGATCAAGATGAGTCATCGGAGGAAGAGGTAGAGTATGAAGAAGTGGAGGTGGAGGAAGAAGTGGAAGTGGAAGAAGAAGAGGAGGAGGAGGAAGTGGAAGAGGAAGAAGATGCAGAGGAAGGTAGTAAGCCTTCAGACGGTGAAGACGAGATGAGAGTGGACAATACTGAGGATGAGGTTGAGAAGAAGAGACATGCTGAACTTCTTGCGCTACCACCTCATGGTTCAGAAGTCTACATTGGGGGAATTCCTCATGACGTTTCTGAAAAAGATTTAAGTGTCTTCTGTCGATCAGTGGGAGAAGCTGTAGAGGTAAGGATTATGAAGGGGAAAGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCAAAGGCTATCGAGGAGTTGAACAACACTGAATTCAAGGGAAACAAAATAAAGTGCTCAACTACTCAAGTTAAGCATAGGTTATTCATTGGAAATGTTCCTAGAGATTGGACTGTTGAAGATATGAAGAAGGTTGTTGCAAAGGTTGGCCCTGGCGTCATTTCTGTGGAACTGTTGAAGGATCCACAGAGTTCTGGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGGCCAACTCCAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCAGCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAAACATAACCCAGGATCGCCTGAAGGAGTTGTTTGAACATCATGGTAAGATCACAAAAGTGGCTATCCCTCCTGCTAAAGCTGGACAAGAGAAGAGCAGATATGGTTTTGTGCACTTTGCTGATAGATCATGTGCAATGAAGGCATTGAAGAACACGGAGAAATATGAGATTGATGGCCAAACTTTGGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAGTCATCTGGTATATCAAATTCACACCAGTCAGCTATACTTCCTACTTATCCACCCCCTCTTGGTTATAGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCCGCTGGCTTTGCACAGCCACTGATGTATGGTCCTGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTCTACCCGATGGAAGGATTGCATATGTATTGCAACAGCCAGGTTTGCAGCAGTCGAGTTTGCCACAGCCAGTTTTTCAACAGCATGCTGCTTCACCAGTAACTCGACATGGCAGGGGTGGTGGTGGTAGCTCAAGTGGTGAAAAACGCAATAACGATCATAACCGTAATCGTGGACCTGGCCGATATAATCCCTACTAA 1500 0.4527 MHTMPGTGQKEGTAQNSESTGGNGDPEKPTDSGEQIDLDGDNDQDESSEEEVEYEEVEVEEEVEVEEEEEEEEVEEEEDAEEGSKPSDGEDEMRVDNTEDEVEKKRHAELLALPPHGSEVYIGGIPHDVSEKDLSVFCRSVGEAVEVRIMKGKEAKGYAFVTFKTKELASKAIEELNNTEFKGNKIKCSTTQVKHRLFIGNVPRDWTVEDMKKVVAKVGPGVISVELLKDPQSSGRNRGFAFIEYHNHACAEYSRQKMANSKFKLDNNAPTVSWADPRNSDSSASSQVKAVYVKNLPENITQDRLKELFEHHGKITKVAIPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGISNSHQSAILPTYPPPLGYSMVGGGYGAVGAGYGAAGFAQPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLQQSSLPQPVFQQHAASPVTRHGRGGGGSSSGEKRNNDHNRNRGPGRYNPY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05718 499 MobiDBLite consensus disorder prediction 36 86 - -
Vivi6g05718 499 MobiDBLite consensus disorder prediction 87 102 - -
Vivi6g05718 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 264 IPR000504 GO:0003723
Vivi6g05718 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 360 IPR000504 GO:0003723
Vivi6g05718 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 187 IPR000504 GO:0003723
Vivi6g05718 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 193 IPR000504 GO:0003723
Vivi6g05718 499 Gene3D - 35 195 IPR012677 -
Vivi6g05718 499 SUPERFAMILY RNA-binding domain, RBD 195 281 IPR035979 GO:0003676
Vivi6g05718 499 Gene3D - 196 276 IPR012677 -
Vivi6g05718 499 CDD RRM_SF 120 189 - -
Vivi6g05718 499 MobiDBLite consensus disorder prediction 1 26 - -
Vivi6g05718 499 Gene3D - 278 410 IPR012677 -
Vivi6g05718 499 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 30 489 - -
Vivi6g05718 499 MobiDBLite consensus disorder prediction 1 102 - -
Vivi6g05718 499 SUPERFAMILY RNA-binding domain, RBD 115 369 IPR035979 GO:0003676
Vivi6g05718 499 Coils Coil 49 80 - -
Vivi6g05718 499 SMART rrm1_1 290 363 IPR000504 GO:0003723
Vivi6g05718 499 SMART rrm1_1 119 189 IPR000504 GO:0003723
Vivi6g05718 499 SMART rrm1_1 196 273 IPR000504 GO:0003723
Vivi6g05718 499 MobiDBLite consensus disorder prediction 453 499 - -
Vivi6g05718 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 277 IPR000504 GO:0003723
Vivi6g05718 499 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 196 276 - -
Vivi6g05718 499 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 278 387 - -
Vivi6g05718 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05718 Vivi-Chr6 163602697 163608214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05718 120 434 Eukaryotic Initiation Factors Gene Family AT4G34110 23.784 3.79e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05718 K13161 - gmx:100798476 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05718 6 163602697 163608214 Vivi6g05718 6 163602697 163608214 ECH