Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05714 ATGGATTCACTAAGCCCTGCCGTCTTTGTCAACTCTGAACTGTTACCCTTCTGTGTTGGAAGAAGGGTTCGTACTGTGATCCAAGTTATGCGATCTGACGGTGTAGTTGTCATTGGAAAATCACCTGATGAGAAACAAATTATTGTAAAAACATCACCTGATTCACCCCTACCATCTCCTCATACGGGTTTTGTAGAAGTTATTGGTATTGTTAGCAGTGACAAGTCCATCAAAGCTGAGTTATGGACCAACTTTGGCGATGAAATTGATATGTTCAGCTACCATAAGCTTTGTCAGCTTGCAAATGGAGAATTCAAACACTTGTTCCTCTGA 333 0.4114 MDSLSPAVFVNSELLPFCVGRRVRTVIQVMRSDGVVVIGKSPDEKQIIVKTSPDSPLPSPHTGFVEVIGIVSSDKSIKAELWTNFGDEIDMFSYHKLCQLANGEFKHLFL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05714 110 Pfam Replication factor A protein 3 6 106 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi6g05714 110 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 110 - -
Vivi6g05714 110 Gene3D - 2 110 IPR012340 -
Vivi6g05714 110 SUPERFAMILY Nucleic acid-binding proteins 6 109 IPR012340 -
Vivi6g05714 110 CDD RPA3 6 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05714 Vivi-Chr6 163472921 163474386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05714 1 110 Core DNA Replication Machinery Family AT4G18590 57.273 4.43e-42 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05714 K10740 - gmx:100306641 152.14